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Install pyarrow on alpine in docker
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Dockerfile
FROM python:3.7-alpine3.8
RUN apk add --no-cache \
build-base \
cmake \
bash \
jemalloc-dev \
boost-dev \
autoconf \
zlib-dev \
flex \
bison
RUN pip install --no-cache-dir six pytest numpy cython
RUN pip install --no-cache-dir pandas
ARG ARROW_VERSION=0.12.0
ARG ARROW_SHA1=2ede75769e12df972f0acdfddd53ab15d11e0ac2
ARG ARROW_BUILD_TYPE=release
ENV ARROW_HOME=/usr/local \
PARQUET_HOME=/usr/local
#Download and build apache-arrow
RUN mkdir /arrow \
&& apk add --no-cache curl \
&& curl -o /tmp/apache-arrow.tar.gz -SL https://github.com/apache/arrow/archive/apache-arrow-${ARROW_VERSION}.tar.gz \
&& echo "$ARROW_SHA1 *apache-arrow.tar.gz" | sha1sum /tmp/apache-arrow.tar.gz \
&& tar -xvf /tmp/apache-arrow.tar.gz -C /arrow --strip-components 1 \
&& mkdir -p /arrow/cpp/build \
&& cd /arrow/cpp/build \
&& cmake -DCMAKE_BUILD_TYPE=$ARROW_BUILD_TYPE \
-DCMAKE_INSTALL_LIBDIR=lib \
-DCMAKE_INSTALL_PREFIX=$ARROW_HOME \
-DARROW_PARQUET=on \
-DARROW_PYTHON=on \
-DARROW_PLASMA=on \
-DARROW_BUILD_TESTS=OFF \
.. \
&& make -j$(nproc) \
&& make install \
&& cd /arrow/python \
&& python setup.py build_ext --build-type=$ARROW_BUILD_TYPE --with-parquet \
&& python setup.py install \
&& rm -rf /arrow /tmp/apache-arrow.tar.gz
@skorzan
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skorzan commented Sep 14, 2022 •
edited
Loading

I've tried a few different config:
alpine python 3.9.14
without pandas packages
but on ARROW_VERSION 9.0.0
-> failed
with pandas it was also failed, do You have a solution for the newer release of arrow?

#12 164.8 -- stderr output is:
#12 164.8 In file included from /arrow/cpp/build/thrift_ep-prefix/src/thrift_ep/lib/cpp/src/thrift/transport/TSocket.cpp:37:
#12 164.8 /usr/include/sys/poll.h:1:2: warning: #warning redirecting incorrect #include <sys/poll.h> to <poll.h> [-Wcpp]
#12 164.8     1 | #warning redirecting incorrect #include <sys/poll.h> to <poll.h>
#12 164.8       |  ^~~~~~~
#12 164.8 In file included from /arrow/cpp/build/thrift_ep-prefix/src/thrift_ep/lib/cpp/src/thrift/transport/TServerSocket.cpp:33:
#12 164.8 /usr/include/sys/poll.h:1:2: warning: #warning redirecting incorrect #include <sys/poll.h> to <poll.h> [-Wcpp]
#12 164.8     1 | #warning redirecting incorrect #include <sys/poll.h> to <poll.h>
#12 164.8       |  ^~~~~~~
#12 164.8 In file included from /arrow/cpp/build/thrift_ep-prefix/src/thrift_ep/lib/cpp/src/thrift/transport/TSSLSocket.cpp:34:
#12 164.8 /usr/include/sys/poll.h:1:2: warning: #warning redirecting incorrect #include <sys/poll.h> to <poll.h> [-Wcpp]
#12 164.8     1 | #warning redirecting incorrect #include <sys/poll.h> to <poll.h>
#12 164.8       |  ^~~~~~~
#12 164.8 /arrow/cpp/build/thrift_ep-prefix/src/thrift_ep/lib/cpp/src/thrift/transport/TSSLSocket.cpp: In function 'void apache::thrift::transport::cleanupOpenSSL()':
#12 164.8 /arrow/cpp/build/thrift_ep-prefix/src/thrift_ep/lib/cpp/src/thrift/transport/TSSLSocket.cpp:157:3: error: 'OPENSSL_thread_stop' was not declared in this scope; did you mean 'OPENSSL_realloc'?
#12 164.8   157 |   OPENSSL_thread_stop();
#12 164.8       |   ^~~~~~~~~~~~~~~~~~~
#12 164.8       |   OPENSSL_realloc
#12 164.8 /arrow/cpp/build/thrift_ep-prefix/src/thrift_ep/lib/cpp/src/thrift/transport/TSSLSocket.cpp: In member function 'virtual void apache::thrift::transport::TSSLSocket::close()':
#12 164.8 /arrow/cpp/build/thrift_ep-prefix/src/thrift_ep/lib/cpp/src/thrift/transport/TSSLSocket.cpp:395:5: error: 'OPENSSL_thread_stop' was not declared in this scope; did you mean 'OPENSSL_realloc'?
#12 164.8   395 |     OPENSSL_thread_stop();
#12 164.8       |     ^~~~~~~~~~~~~~~~~~~
#12 164.8       |     OPENSSL_realloc
#12 164.8 make[5]: *** [lib/cpp/CMakeFiles/thrift.dir/build.make:566: lib/cpp/CMakeFiles/thrift.dir/src/thrift/transport/TSSLSocket.cpp.o] Error 1
#12 164.8 make[5]: *** Waiting for unfinished jobs....
#12 164.8 make[4]: *** [CMakeFiles/Makefile2:125: lib/cpp/CMakeFiles/thrift.dir/all] Error 2
#12 164.8 make[3]: *** [Makefile:156: all] Error 2
#12 164.8
#12 164.8 CMake Error at /arrow/cpp/build/thrift_ep-prefix/src/thrift_ep-stamp/thrift_ep-build-RELEASE.cmake:47 (message):
#12 164.8   Stopping after outputting logs.
#12 164.8
#12 164.8
#12 164.8 make[2]: *** [CMakeFiles/thrift_ep.dir/build.make:86: thrift_ep-prefix/src/thrift_ep-stamp/thrift_ep-build] Error 1
#12 164.8 make[1]: *** [CMakeFiles/Makefile2:940: CMakeFiles/thrift_ep.dir/all] Error 2
#12 164.8 make[1]: *** Waiting for unfinished jobs....
#12 187.8 -- re2_ep build command succeeded.  See also /arrow/cpp/build/re2_ep-prefix/src/re2_ep-stamp/re2_ep-build-*.log
#12 187.8 [ 20%] Performing install step for 're2_ep'
#12 188.7 -- re2_ep install command succeeded.  See also /arrow/cpp/build/re2_ep-prefix/src/re2_ep-stamp/re2_ep-install-*.log
#12 188.7 [ 20%] Completed 're2_ep'
#12 188.7 [ 20%] Built target re2_ep
#12 212.4 -- jemalloc_ep build command succeeded.  See also /arrow/cpp/build/jemalloc_ep-prefix/src/jemalloc_ep-stamp/jemalloc_ep-build-*.log
#12 212.4 [ 20%] Performing install step for 'jemalloc_ep'
#12 212.5 -- jemalloc_ep install command succeeded.  See also /arrow/cpp/build/jemalloc_ep-prefix/src/jemalloc_ep-stamp/jemalloc_ep-install-*.log
#12 212.5 [ 20%] Completed 'jemalloc_ep'
#12 212.5 [ 20%] Built target jemalloc_ep
#12 212.5 make: *** [Makefile:146: all] Error 2
------
executor failed running [/bin/sh -c mkdir /arrow     && wget -q https://github.com/apache/arrow/archive/apache-arrow-${ARROW_VERSION}.tar.gz -O /tmp/apache-arrow.tar.gz     && tar -xvf /tmp/apache-arrow.tar.gz -C /arrow --strip-components 1     && mkdir -p /arrow/cpp/build     && cd /arrow/cpp/build     && cmake -DCMAKE_BUILD_TYPE=$ARROW_BUILD_TYPE         -DOPENSSL_ROOT_DIR=/usr/local/ssl         -DCMAKE_INSTALL_LIBDIR=lib         -DCMAKE_INSTALL_PREFIX=$ARROW_HOME         -DARROW_WITH_BZ2=ON         -DARROW_WITH_ZLIB=ON         -DARROW_WITH_ZSTD=ON         -DARROW_WITH_LZ4=ON         -DARROW_WITH_SNAPPY=ON         -DARROW_PARQUET=ON         -DARROW_PYTHON=ON         -DARROW_PLASMA=ON         -DARROW_BUILD_TESTS=OFF         ..     && make -j$(nproc)     && make install     && cd /arrow/python     && python setup.py build_ext --build-type=$ARROW_BUILD_TYPE --with-parquet     && python setup.py install     && rm -rf /arrow /tmp/apache-arrow.tar.gz]: exit code: 2

@mrn-aglic
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No, I don't. I tried a few solutions that I found by Googling, but none of them work. I'm currently totally lost.

@notariuss
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notariuss commented Oct 19, 2022 •
edited
Loading 

FROM python:3.7.15-alpine3.16

RUN apk add --no-cache bash \
    postgresql-dev \
    gettext \
    gcc \
    musl-dev \
    make \
    cmake \
    g++ \
    git \
    boost-dev \
    flex \
    bison \
    zlib-dev \
    autoconf \
    build-base

WORKDIR /code

COPY . /code

RUN pip install --no-cache --upgrade pip wheel
RUN pip install --no-cache -r requirements.txt

RUN apk del git make cmake g++

      -- Could NOT find Arrow (missing: Arrow_DIR)
      -- Checking for module 'arrow'
      --   Package 'arrow', required by 'virtual:world', not found
      CMake Error at /usr/share/cmake/Modules/FindPackageHandleStandardArgs.cmake:230 (message):
        Could NOT find Arrow (missing: ARROW_INCLUDE_DIR ARROW_LIB_DIR
        ARROW_FULL_SO_VERSION ARROW_SO_VERSION)
      Call Stack (most recent call first):
        /usr/share/cmake/Modules/FindPackageHandleStandardArgs.cmake:594 (_FPHSA_FAILURE_MESSAGE)
        cmake_modules/FindArrow.cmake:419 (find_package_handle_standard_args)
        cmake_modules/FindArrowPython.cmake:46 (find_package)
        CMakeLists.txt:218 (find_package)

@arthurdevries
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I can't make this work either. If someone has knowledge about what the underlying problem is I will gladly put in some time and effort and try to make this work. Unfortunately, my knowledge about this thus far is quite limited. I would really like to work with the Alpine base image as it is a safe and small starting point. I am using python:3.11-alpine as a base.

@sergeibelov113
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sergeibelov113 commented Jul 21, 2024 •
edited
Loading

I can't make this work either. If someone has knowledge about what the underlying problem is I will gladly put in some time and effort and try to make this work. Unfortunately, my knowledge about this thus far is quite limited. I would really like to work with the Alpine base image as it is a safe and small starting point. I am using python:3.11-alpine as a base.

I've managed to build pyarrow with apache arrow finally, but the resulted image is 3,5GB
And building lasts about 30 min. Here is the confirmed docker file:

FROM --platform=linux/amd64 python:3.12-alpine AS base

# Setup env
ENV LANG=C.UTF-8
ENV LC_ALL=C.UTF-8
ENV PYTHONDONTWRITEBYTECODE=1
ENV PYTHONFAULTHANDLER=1
ENV ACCEPT_EULA=Y

RUN apk update && apk add --no-cache \
    gcc \
    g++ \
    curl \
    unixodbc-dev \
    bash \
    libffi-dev \
    openssl-dev \
    cargo \
    musl-dev \
    postgresql-dev \
    cmake \
    rust \
    linux-headers \
    libc-dev \
    libgcc \
    libstdc++ \
    ca-certificates \
    zlib-dev \
    bzip2-dev \
    xz-dev \
    lz4-dev \
    zstd-dev \
    snappy-dev \
    brotli-dev \
    build-base \
    autoconf \
    boost-dev \
    flex \
    libxml2-dev \
    libxslt-dev \
    libjpeg-turbo-dev \
    ninja \
    git \
    && pip install --upgrade pip && pip install pipenv cython numpy

ARG ARROW_VERSION=17.0.0
ARG ARROW_SHA256=8379554d89f19f2c8db63620721cabade62541f47a4e706dfb0a401f05a713ef
ARG ARROW_BUILD_TYPE=release

ENV ARROW_HOME=/usr/local \
    PARQUET_HOME=/usr/local

RUN mkdir /arrow \
    && wget -q https://github.com/apache/arrow/archive/apache-arrow-${ARROW_VERSION}.tar.gz -O /tmp/apache-arrow.tar.gz \
    && echo "${ARROW_SHA256} *apache-arrow.tar.gz" | sha256sum /tmp/apache-arrow.tar.gz \
    && tar -xvf /tmp/apache-arrow.tar.gz -C /arrow --strip-components 1

# Create the patch file for re2
RUN echo "diff --git a/util/pcre.h b/util/pcre.h" > /arrow/re2_patch.diff \
    && echo "index e69de29..b6f3e31 100644" >> /arrow/re2_patch.diff \
    && echo "--- a/util/pcre.h" >> /arrow/re2_patch.diff \
    && echo "+++ b/util/pcre.h" >> /arrow/re2_patch.diff \
    && echo "@@ -21,6 +21,7 @@" >> /arrow/re2_patch.diff \
    && echo " #include \"re2/filtered_re2.h\"" >> /arrow/re2_patch.diff \
    && echo " #include \"re2/pod_array.h\"" >> /arrow/re2_patch.diff \
    && echo " #include \"re2/stringpiece.h\"" >> /arrow/re2_patch.diff \
    && echo "+#include <cstdint>" >> /arrow/re2_patch.diff

# Configure the build using CMake
RUN cd /arrow/cpp \
    && cmake --preset ninja-release-python

# Pre-fetch dependencies without building
RUN cd /arrow/cpp \
    && cmake --build . --target re2_ep -- -j1 || true

# Apply the patch to re2 after the dependencies are fetched but before the build
RUN cd /arrow/cpp/re2_ep-prefix/src/re2_ep \
    && patch -p1 < /arrow/re2_patch.diff

# Continue with the build and install Apache Arrow
RUN cd /arrow/cpp \
    && cmake --build . --target install \
    && rm -rf /arrow /tmp/apache-arrow.tar.gz

COPY Pipfile .
COPY Pipfile.lock .

RUN PIPENV_VENV_IN_PROJECT=1 pipenv install --deploy

# Final Stage
FROM base AS runtime
COPY --from=base /.venv /.venv
ENV PATH="/.venv/bin:$PATH"

WORKDIR /app

COPY src .

CMD ["python3", "main.py"]

I use pipenv to build dependencies, so you can customize the image for your needs.
or just add RUN pip install pyarrow or update these lines from original Dockerfile above like:

RUN cd /arrow/cpp \
    && cmake --build . --target install \
    && cd /arrow/python \
    && python setup.py build_ext --build-type=$ARROW_BUILD_TYPE --with-parquet \
    && python setup.py install \
    && rm -rf /arrow /tmp/apache-arrow.tar.gz

there is also a bug with pcre.h in apache arrow source code, so I applied patch within the Dockerimage. maybe it's not bug though, but I reported it here: #43350

@laerteallan
Copy link

I think necessary

I can't make this work either. If someone has knowledge about what the underlying problem is I will gladly put in some time and effort and try to make this work. Unfortunately, my knowledge about this thus far is quite limited. I would really like to work with the Alpine base image as it is a safe and small starting point. I am using python:3.11-alpine as a base.

I've managed to build pyarrow with apache arrow finally, but the resulted image is 3,5GB And building lasts about 30 min. Here is the confirmed docker file:

FROM --platform=linux/amd64 python:3.12-alpine AS base

# Setup env
ENV LANG=C.UTF-8
ENV LC_ALL=C.UTF-8
ENV PYTHONDONTWRITEBYTECODE=1
ENV PYTHONFAULTHANDLER=1
ENV ACCEPT_EULA=Y

RUN apk update && apk add --no-cache \
    gcc \
    g++ \
    curl \
    unixodbc-dev \
    bash \
    libffi-dev \
    openssl-dev \
    cargo \
    musl-dev \
    postgresql-dev \
    cmake \
    rust \
    linux-headers \
    libc-dev \
    libgcc \
    libstdc++ \
    ca-certificates \
    zlib-dev \
    bzip2-dev \
    xz-dev \
    lz4-dev \
    zstd-dev \
    snappy-dev \
    brotli-dev \
    build-base \
    autoconf \
    boost-dev \
    flex \
    libxml2-dev \
    libxslt-dev \
    libjpeg-turbo-dev \
    ninja \
    git \
    && pip install --upgrade pip && pip install pipenv cython numpy

ARG ARROW_VERSION=17.0.0
ARG ARROW_SHA256=8379554d89f19f2c8db63620721cabade62541f47a4e706dfb0a401f05a713ef
ARG ARROW_BUILD_TYPE=release

ENV ARROW_HOME=/usr/local \
    PARQUET_HOME=/usr/local

RUN mkdir /arrow \
    && wget -q https://github.com/apache/arrow/archive/apache-arrow-${ARROW_VERSION}.tar.gz -O /tmp/apache-arrow.tar.gz \
    && echo "${ARROW_SHA256} *apache-arrow.tar.gz" | sha256sum /tmp/apache-arrow.tar.gz \
    && tar -xvf /tmp/apache-arrow.tar.gz -C /arrow --strip-components 1

# Create the patch file for re2
RUN echo "diff --git a/util/pcre.h b/util/pcre.h" > /arrow/re2_patch.diff \
    && echo "index e69de29..b6f3e31 100644" >> /arrow/re2_patch.diff \
    && echo "--- a/util/pcre.h" >> /arrow/re2_patch.diff \
    && echo "+++ b/util/pcre.h" >> /arrow/re2_patch.diff \
    && echo "@@ -21,6 +21,7 @@" >> /arrow/re2_patch.diff \
    && echo " #include \"re2/filtered_re2.h\"" >> /arrow/re2_patch.diff \
    && echo " #include \"re2/pod_array.h\"" >> /arrow/re2_patch.diff \
    && echo " #include \"re2/stringpiece.h\"" >> /arrow/re2_patch.diff \
    && echo "+#include <cstdint>" >> /arrow/re2_patch.diff

# Configure the build using CMake
RUN cd /arrow/cpp \
    && cmake --preset ninja-release-python

# Pre-fetch dependencies without building
RUN cd /arrow/cpp \
    && cmake --build . --target re2_ep -- -j1 || true

# Apply the patch to re2 after the dependencies are fetched but before the build
RUN cd /arrow/cpp/re2_ep-prefix/src/re2_ep \
    && patch -p1 < /arrow/re2_patch.diff

# Continue with the build and install Apache Arrow
RUN cd /arrow/cpp \
    && cmake --build . --target install \
    && rm -rf /arrow /tmp/apache-arrow.tar.gz

COPY Pipfile .
COPY Pipfile.lock .

RUN PIPENV_VENV_IN_PROJECT=1 pipenv install --deploy

# Final Stage
FROM base AS runtime
COPY --from=base /.venv /.venv
ENV PATH="/.venv/bin:$PATH"

WORKDIR /app

COPY src .

CMD ["python3", "main.py"]

I use pipenv to build dependencies, so you can customize the image for your needs. or just add RUN pip install pyarrow or update these lines from original Dockerfile above like:

RUN cd /arrow/cpp \
    && cmake --build . --target install \
    && cd /arrow/python \
    && python setup.py build_ext --build-type=$ARROW_BUILD_TYPE --with-parquet \
    && python setup.py install \
    && rm -rf /arrow /tmp/apache-arrow.tar.gz

there is also a bug with pcre.h in apache arrow source code, so I applied patch within the Dockerimage. maybe it's not bug though, but I reported it here: #43350

I think necessary reply here, because that docker help me so much. Thanks

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