BioPAX L3 Transport Example

transport.txt

// From: https://www.pathwaycommons.org/archives/PC2/v12/PathwayCommons12.pid.BIOPAX.owl
// NOTE: Removed some evidence, comments, datasources, xrefs 

<bp:Transport rdf:ID="Transport_e5c5c3064a35275da036764754d82987">
 <bp:participantStoichiometry rdf:resource="#Stoichiometry_c62e952f57267e590061a656114147e6" />
 <bp:participantStoichiometry rdf:resource="#Stoichiometry_35daf0896d936055fc0ce682622172f4" />
 <bp:xref rdf:resource="http://identifiers.org/pubmed/11756469" />
 <bp:right rdf:resource="#Protein_cbbdfcd1f7535c5e7d154b9a7d49a428" />
 <bp:left rdf:resource="#Protein_c9661c9e4c9789d8d328a723f626a460" />
 <bp:comment rdf:datatype = "http://www.w3.org/2001/XMLSchema#string">REPLACED http://pathwaycommons.org/pc12/Transport_e5c5c3064a35275da036764754d82987</bp:comment>
 <bp:dataSource rdf:resource="#Provenance_16dc1eb6f42ce7a52939ce2863d7741f" />
</bp:Transport>

<bp:Stoichiometry rdf:ID="Stoichiometry_c62e952f57267e590061a656114147e6">
 <bp:physicalEntity rdf:resource="#Protein_cbbdfcd1f7535c5e7d154b9a7d49a428" />
 <bp:stoichiometricCoefficient rdf:datatype = "http://www.w3.org/2001/XMLSchema#float">1.0</bp:stoichiometricCoefficient>
</bp:Stoichiometry>

<bp:Stoichiometry rdf:ID="Stoichiometry_35daf0896d936055fc0ce682622172f4">
 <bp:physicalEntity rdf:resource="#Protein_c9661c9e4c9789d8d328a723f626a460" />
 <bp:stoichiometricCoefficient rdf:datatype = "http://www.w3.org/2001/XMLSchema#float">1.0</bp:stoichiometricCoefficient>
</bp:Stoichiometry>

<bp:Protein rdf:ID="Protein_cbbdfcd1f7535c5e7d154b9a7d49a428">
 <bp:displayName rdf:datatype = "http://www.w3.org/2001/XMLSchema#string">Aurora B</bp:displayName>
 <bp:cellularLocation rdf:resource="#CellularLocationVocabulary_8dd8e5af31fc97132caa885dc7c1c2ca" />
 <bp:entityReference rdf:resource="http://identifiers.org/uniprot/Q96GD4" />
</bp:Protein>

<bp:Protein rdf:ID="Protein_c9661c9e4c9789d8d328a723f626a460">
 <bp:displayName rdf:datatype = "http://www.w3.org/2001/XMLSchema#string">Aurora B</bp:displayName>
 <bp:entityReference rdf:resource="http://identifiers.org/uniprot/Q96GD4" />
</bp:Protein>

<bp:CellularLocationVocabulary rdf:ID="CellularLocationVocabulary_8dd8e5af31fc97132caa885dc7c1c2ca">
 <bp:xref rdf:resource="#UnificationXref_gene_ontology_GO_0000939" />
 <bp:term rdf:datatype = "http://www.w3.org/2001/XMLSchema#string">inner kinetochore of condensed chromosome</bp:term>
</bp:CellularLocationVocabulary>

<bp:UnificationXref rdf:ID="UnificationXref_gene_ontology_GO_0000939">
 <bp:id rdf:datatype = "http://www.w3.org/2001/XMLSchema#string">GO:0000939</bp:id>
 <bp:db rdf:datatype = "http://www.w3.org/2001/XMLSchema#string">gene ontology</bp:db>
</bp:UnificationXref>

<bp:Provenance rdf:ID="Provenance_16dc1eb6f42ce7a52939ce2863d7741f">
 <bp:standardName rdf:datatype = "http://www.w3.org/2001/XMLSchema#string">NCI Pathway Interaction Database: Pathway</bp:standardName>
 <bp:displayName rdf:datatype = "http://www.w3.org/2001/XMLSchema#string">pid</bp:displayName>
</bp:Provenance>