Script de submissão para processo recanl do oensMB09 na egeon

setrecanlANLSMT.TQ0126L042.2020090100.Linux

#! /bin/bash -x

#SBATCH --output=/mnt/beegfs/carlos.bastarz/oensMB09/recanl/output/setrecanlANLSMT.TQ0126L042.2020090100.Linux.23112411:33.out
#SBATCH --error=/mnt/beegfs/carlos.bastarz/oensMB09/recanl/output/setrecanlANLSMT.TQ0126L042.2020090100.Linux.23112411:33.err
#SBATCH --time=00:30:00
#SBATCH --tasks-per-node=1
#SBATCH --nodes=1
#SBATCH --job-name=RECANL
#SBATCH --partition=PESQ1


export PBS_SERVER=headnode

cd /mnt/beegfs/carlos.bastarz/oensMB09/run
. /mnt/beegfs/carlos.bastarz/oensMB09/run/EnvironmentalVariablesMCGA TQ0126L042 SMT

#
# Set date (year,month,day) and hour (hour:minute) 
#
# DATE=yyyymmdd
# HOUR=hh:mn
#

export DATE=$(date +'%Y')$(date +'%m')$(date +'%d')
export HOUR=$(date +'%H:%M')

echo "Date: "${DATE}
echo "Hour: "${HOUR}

#
# LABELI = yyyymmddhh
# LABELI = input file start label
#

export LABELI=2020090100

#
# Prefix names for the FORTRAN files
#
# NAMEL - List file name prefix
# NAMES - Input spectral file name prefix
# NAMER - Output gridded file name prefix
#
# Suffix names for the FORTRAN files
#
# EXTL - List file name suffix
# ERSi - Input spectral file name suffix
# ERRi - Output gridded file name suffix
#

export NAMEL=GANLSMT
export NAMES=GANLSMT
export NAMER=GANLSMT

if [ ANLSMT == ANLAVN -o ANLSMT == ANLNMC -o ANLSMT == ANLSMT -o ANLSMT == ANLEIT -o ANLSMT == ANLEIH ]
then
  export EXTL=S.unf
  export ERS1=S.unf
  export ERR1=R.unf
else
  export EXTL=F.ens
  export ERS1=F.ens
  export ERR1=R.ens
fi

#
# Set directories
#
# OPERMOD  is the directory for sources, scripts and
#          printouts files.
# DK_suite is the directory for input and output data
#          and bin files.
# ROPERMOD is the directory for big selected output files.
# IOPERMOD is the directory for input file.
#

cd /mnt/beegfs/carlos.bastarz/oensMB09/run

#
# Now, build the necessary NAMELIST input:
#

export GNAMEL=${NAMEL}2020090100${EXTL}.TQ0126L042
echo /mnt/beegfs/carlos.bastarz/oensMB09/recanl/datain/${GNAMEL}

cat <<EOT2 > /mnt/beegfs/carlos.bastarz/oensMB09/recanl/datain/${GNAMEL}
${NAMES}2020090100${ERS1}.TQ0126L042
${NAMER}2020090100${ERR1}.TQ0126L042
EOT2

mkdir -p /mnt/beegfs/carlos.bastarz/oensMB09/recanl/datain

cat <<EOT3 > /mnt/beegfs/carlos.bastarz/oensMB09/recanl/datain/recanlANLSMT.nml
 &DATAIN
  LDIM=1
  DIRL='/mnt/beegfs/carlos.bastarz/oensMB09/recanl/datain/ '
  DIRS='/mnt/beegfs/carlos.bastarz/oensMB09/model/datain/ '
  DIRR='/mnt/beegfs/carlos.bastarz/oensMB09/recanl/dataout/TQ0126L042/ '
  GNAMEL='${GNAMEL} '
 &END
EOT3

mkdir -p /mnt/beegfs/carlos.bastarz/oensMB09/recanl/dataout/TQ0126L042/ 
cd /mnt/beegfs/carlos.bastarz/oensMB09/run

#
# Run recomposition
#

echo 'Running recomposition...'

#
# Set directories
#

export recanl_dir=/mnt/beegfs/carlos.bastarz/oensMB09/recanl

export source=${recanl_dir}/source
export bin=${recanl_dir}/bin/TQ0126L042; mkdir -p ${bin}
export input=${recanl_dir}/datain; mkdir -p ${input}
export out=${recanl_dir}/output; mkdir -p ${out}

cd ${bin}

module load singularity ; singularity exec -e --bind /mnt/beegfs/carlos.bastarz:/mnt/beegfs/carlos.bastarz /mnt/beegfs/carlos.bastarz/containers/oensMB09_BAM_V1.2.1_TQ0126L042_Env_XC50-Ubuntu-18.04_gcc-4.8.5_mpich-3.3_cmake-3.25.2_new-libs.sif mpirun -np 1 /opt/oensMB09-3-testes-com-o-compilador-intel/recanl/bin/TQ0126L042/recanl.TQ0126L042 < ${input}/recanlANLSMT.nml > ${out}/recanl.out.2020090100.${HOUR}.TQ0126L042 

touch /mnt/beegfs/carlos.bastarz/oensMB09/recanl/output/monitor.t