cjayb

import mne

raw=mne.io.Raw('/aux/Lau/timingChris/PROJ0156_SUBJ0001_SER001_FILESNO001.fif',preload=False)

pick_misc = mne.pick_channels(raw.info['ch_names'], include='MISC001')
events = mne.find_events(raw, stim_channel='STI101', min_duration=0.002, consecutive=True)

# hvis 232 skal fjernes, kan det goeres saaledes
incl_range = range(100,300)
incl_range.remove(232)

cjayb

# if python from brew, otherwise might not work
 
brew install portaudio portmidi libsndfile liblo jack
 
brew link portaudio portmidi libsndfile liblo
 
cd ~/Sites/tmp
 
svn checkout http://pyo.googlecode.com/svn/trunk/ pyo-read-only
 

cjayb

# -*- coding: utf-8 -*-
"""
Examine if a 2x window length is appropriate for savgol filtering.
"""

from scipy.signal import savgol_filter
from scipy import fftpack
import numpy as np
import matplotlib.pyplot as plt
plt.ion()

cjayb

# copy from http://stackoverflow.com/questions/22408237/named-colors-in-matplotlib
# credits to BoshWash
import matplotlib.pyplot as plt
import matplotlib.patches as patches
import matplotlib.colors as colors
import math


fig = plt.figure()
ax = fig.add_subplot(111)

cjayb

#!/bin/bash -x

#
# This script tests the use of the fsaverage brain with MEG
# subjects lacking an individual MRI. In particular, I have
# been unable to change the number of vertices on the resulting
# surface using the --spacing option (mne_setup_source_space,
# mne_do_forward_solution).
#
# The steps here are mainly based on a document created by Matti Hamalainen,

cjayb

from os import path as op
from os import rmdir
import mne
from mne.datasets import testing
from mne.utils import _TempDir

sample_path = op.join(testing.data_path(download=False), 'MEG', 'sample')
raw_fname = op.join(sample_path, 'sample_audvis_trunc_raw.fif')
trans_fname = op.join(sample_path, 'sample_audvis_trunc-trans.fif')

cjayb

from os import path as op
import mne
from mne.datasets import testing
import numpy as np
import matplotlib.pyplot as plt

sample_path = op.join(testing.data_path(download=False), 'MEG', 'sample')
raw_fname = op.join(sample_path, 'sample_audvis_trunc_raw.fif')
trans_fname = op.join(sample_path, 'sample_audvis_trunc-trans.fif')

cjayb

# Passing a mutable object to a function is like passing a C-pointer to
# the memory location of the object -> mutating memory inside the function
# will be "visible" outside the function too.
# Since each function has its own _namespace_, mangling the variable
# is equivalent to moving the pointer away from the passed-in location
# so any changes to the parameter variable remain within the scope of
# the function.

outer_list = [1,2,3,4]

cjayb

from os import path as op
import numpy as np
# from scipy import linalg

import mne

data_path = mne.datasets.sample.data_path()
subjects_dir = op.join(data_path, 'subjects')
fname_ave = op.join(data_path, 'MEG', 'sample', 'sample_audvis-ave.fif')
fname_cov = op.join(data_path, 'MEG', 'sample', 'sample_audvis-cov.fif')

cjayb