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using Tiberius with conda still error's out
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| ~/Downloads ❯❯❯ eval "$(/home/cdiesh/miniconda3/bin/conda shell.zsh hook)" | |
| (base) ~/Downloads ❯❯❯ conda activate tf2_10 ✘ 1 | |
| (tf2_10) ~/Downloads ❯❯❯ python3 -m pip install tensorflow==2.10 numpy==1.24 | |
| Collecting tensorflow==2.10 | |
| Using cached tensorflow-2.10.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (3.1 kB) | |
| Collecting numpy==1.24 | |
| Using cached numpy-1.24.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (5.6 kB) | |
| Collecting absl-py>=1.0.0 (from tensorflow==2.10) | |
| Using cached absl_py-2.1.0-py3-none-any.whl.metadata (2.3 kB) | |
| Collecting astunparse>=1.6.0 (from tensorflow==2.10) | |
| Using cached astunparse-1.6.3-py2.py3-none-any.whl.metadata (4.4 kB) | |
| Collecting flatbuffers>=2.0 (from tensorflow==2.10) | |
| Using cached flatbuffers-24.3.25-py2.py3-none-any.whl.metadata (850 bytes) | |
| Collecting gast<=0.4.0,>=0.2.1 (from tensorflow==2.10) | |
| Using cached gast-0.4.0-py3-none-any.whl.metadata (1.1 kB) | |
| Collecting google-pasta>=0.1.1 (from tensorflow==2.10) | |
| Using cached google_pasta-0.2.0-py3-none-any.whl.metadata (814 bytes) | |
| Collecting grpcio<2.0,>=1.24.3 (from tensorflow==2.10) | |
| Using cached grpcio-1.66.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (3.9 kB) | |
| Collecting h5py>=2.9.0 (from tensorflow==2.10) | |
| Using cached h5py-3.12.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.5 kB) | |
| Collecting keras<2.11,>=2.10.0 (from tensorflow==2.10) | |
| Using cached keras-2.10.0-py2.py3-none-any.whl.metadata (1.3 kB) | |
| Collecting keras-preprocessing>=1.1.1 (from tensorflow==2.10) | |
| Using cached Keras_Preprocessing-1.1.2-py2.py3-none-any.whl.metadata (1.9 kB) | |
| Collecting libclang>=13.0.0 (from tensorflow==2.10) | |
| Using cached libclang-18.1.1-py2.py3-none-manylinux2010_x86_64.whl.metadata (5.2 kB) | |
| Collecting opt-einsum>=2.3.2 (from tensorflow==2.10) | |
| Using cached opt_einsum-3.3.0-py3-none-any.whl.metadata (6.5 kB) | |
| Collecting packaging (from tensorflow==2.10) | |
| Using cached packaging-24.1-py3-none-any.whl.metadata (3.2 kB) | |
| Collecting protobuf<3.20,>=3.9.2 (from tensorflow==2.10) | |
| Using cached protobuf-3.19.6-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (787 bytes) | |
| Requirement already satisfied: setuptools in /home/cdiesh/miniconda3/envs/tf2_10/lib/python3.9/site-packages (from tensorflow==2.10) (75.1.0) | |
| Collecting six>=1.12.0 (from tensorflow==2.10) | |
| Using cached six-1.16.0-py2.py3-none-any.whl.metadata (1.8 kB) | |
| Collecting tensorboard<2.11,>=2.10 (from tensorflow==2.10) | |
| Using cached tensorboard-2.10.1-py3-none-any.whl.metadata (1.9 kB) | |
| Collecting tensorflow-io-gcs-filesystem>=0.23.1 (from tensorflow==2.10) | |
| Using cached tensorflow_io_gcs_filesystem-0.37.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (14 kB) | |
| Collecting tensorflow-estimator<2.11,>=2.10.0 (from tensorflow==2.10) | |
| Using cached tensorflow_estimator-2.10.0-py2.py3-none-any.whl.metadata (1.3 kB) | |
| Collecting termcolor>=1.1.0 (from tensorflow==2.10) | |
| Using cached termcolor-2.4.0-py3-none-any.whl.metadata (6.1 kB) | |
| Collecting typing-extensions>=3.6.6 (from tensorflow==2.10) | |
| Using cached typing_extensions-4.12.2-py3-none-any.whl.metadata (3.0 kB) | |
| Collecting wrapt>=1.11.0 (from tensorflow==2.10) | |
| Using cached wrapt-1.16.0-cp39-cp39-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (6.6 kB) | |
| Requirement already satisfied: wheel<1.0,>=0.23.0 in /home/cdiesh/miniconda3/envs/tf2_10/lib/python3.9/site-packages (from astunparse>=1.6.0->tensorflow==2.10) (0.44.0) | |
| Collecting google-auth<3,>=1.6.3 (from tensorboard<2.11,>=2.10->tensorflow==2.10) | |
| Using cached google_auth-2.35.0-py2.py3-none-any.whl.metadata (4.7 kB) | |
| Collecting google-auth-oauthlib<0.5,>=0.4.1 (from tensorboard<2.11,>=2.10->tensorflow==2.10) | |
| Using cached google_auth_oauthlib-0.4.6-py2.py3-none-any.whl.metadata (2.7 kB) | |
| Collecting markdown>=2.6.8 (from tensorboard<2.11,>=2.10->tensorflow==2.10) | |
| Using cached Markdown-3.7-py3-none-any.whl.metadata (7.0 kB) | |
| Collecting requests<3,>=2.21.0 (from tensorboard<2.11,>=2.10->tensorflow==2.10) | |
| Using cached requests-2.32.3-py3-none-any.whl.metadata (4.6 kB) | |
| Collecting tensorboard-data-server<0.7.0,>=0.6.0 (from tensorboard<2.11,>=2.10->tensorflow==2.10) | |
| Using cached tensorboard_data_server-0.6.1-py3-none-manylinux2010_x86_64.whl.metadata (1.1 kB) | |
| Collecting tensorboard-plugin-wit>=1.6.0 (from tensorboard<2.11,>=2.10->tensorflow==2.10) | |
| Using cached tensorboard_plugin_wit-1.8.1-py3-none-any.whl.metadata (873 bytes) | |
| Collecting werkzeug>=1.0.1 (from tensorboard<2.11,>=2.10->tensorflow==2.10) | |
| Using cached werkzeug-3.0.4-py3-none-any.whl.metadata (3.7 kB) | |
| Collecting cachetools<6.0,>=2.0.0 (from google-auth<3,>=1.6.3->tensorboard<2.11,>=2.10->tensorflow==2.10) | |
| Using cached cachetools-5.5.0-py3-none-any.whl.metadata (5.3 kB) | |
| Collecting pyasn1-modules>=0.2.1 (from google-auth<3,>=1.6.3->tensorboard<2.11,>=2.10->tensorflow==2.10) | |
| Using cached pyasn1_modules-0.4.1-py3-none-any.whl.metadata (3.5 kB) | |
| Collecting rsa<5,>=3.1.4 (from google-auth<3,>=1.6.3->tensorboard<2.11,>=2.10->tensorflow==2.10) | |
| Using cached rsa-4.9-py3-none-any.whl.metadata (4.2 kB) | |
| Collecting requests-oauthlib>=0.7.0 (from google-auth-oauthlib<0.5,>=0.4.1->tensorboard<2.11,>=2.10->tensorflow==2.10) | |
| Using cached requests_oauthlib-2.0.0-py2.py3-none-any.whl.metadata (11 kB) | |
| Collecting importlib-metadata>=4.4 (from markdown>=2.6.8->tensorboard<2.11,>=2.10->tensorflow==2.10) | |
| Using cached importlib_metadata-8.5.0-py3-none-any.whl.metadata (4.8 kB) | |
| Collecting charset-normalizer<4,>=2 (from requests<3,>=2.21.0->tensorboard<2.11,>=2.10->tensorflow==2.10) | |
| Using cached charset_normalizer-3.3.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (33 kB) | |
| Collecting idna<4,>=2.5 (from requests<3,>=2.21.0->tensorboard<2.11,>=2.10->tensorflow==2.10) | |
| Using cached idna-3.10-py3-none-any.whl.metadata (10 kB) | |
| Collecting urllib3<3,>=1.21.1 (from requests<3,>=2.21.0->tensorboard<2.11,>=2.10->tensorflow==2.10) | |
| Using cached urllib3-2.2.3-py3-none-any.whl.metadata (6.5 kB) | |
| Collecting certifi>=2017.4.17 (from requests<3,>=2.21.0->tensorboard<2.11,>=2.10->tensorflow==2.10) | |
| Using cached certifi-2024.8.30-py3-none-any.whl.metadata (2.2 kB) | |
| Collecting MarkupSafe>=2.1.1 (from werkzeug>=1.0.1->tensorboard<2.11,>=2.10->tensorflow==2.10) | |
| Using cached MarkupSafe-2.1.5-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (3.0 kB) | |
| Collecting zipp>=3.20 (from importlib-metadata>=4.4->markdown>=2.6.8->tensorboard<2.11,>=2.10->tensorflow==2.10) | |
| Using cached zipp-3.20.2-py3-none-any.whl.metadata (3.7 kB) | |
| Collecting pyasn1<0.7.0,>=0.4.6 (from pyasn1-modules>=0.2.1->google-auth<3,>=1.6.3->tensorboard<2.11,>=2.10->tensorflow==2.10) | |
| Using cached pyasn1-0.6.1-py3-none-any.whl.metadata (8.4 kB) | |
| Collecting oauthlib>=3.0.0 (from requests-oauthlib>=0.7.0->google-auth-oauthlib<0.5,>=0.4.1->tensorboard<2.11,>=2.10->tensorflow==2.10) | |
| Using cached oauthlib-3.2.2-py3-none-any.whl.metadata (7.5 kB) | |
| Using cached tensorflow-2.10.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (578.1 MB) | |
| Using cached numpy-1.24.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (17.3 MB) | |
| Using cached absl_py-2.1.0-py3-none-any.whl (133 kB) | |
| Using cached astunparse-1.6.3-py2.py3-none-any.whl (12 kB) | |
| Using cached flatbuffers-24.3.25-py2.py3-none-any.whl (26 kB) | |
| Using cached gast-0.4.0-py3-none-any.whl (9.8 kB) | |
| Using cached google_pasta-0.2.0-py3-none-any.whl (57 kB) | |
| Using cached grpcio-1.66.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (5.8 MB) | |
| Using cached h5py-3.12.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (5.4 MB) | |
| Using cached keras-2.10.0-py2.py3-none-any.whl (1.7 MB) | |
| Using cached Keras_Preprocessing-1.1.2-py2.py3-none-any.whl (42 kB) | |
| Using cached libclang-18.1.1-py2.py3-none-manylinux2010_x86_64.whl (24.5 MB) | |
| Using cached opt_einsum-3.3.0-py3-none-any.whl (65 kB) | |
| Using cached protobuf-3.19.6-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (1.1 MB) | |
| Using cached six-1.16.0-py2.py3-none-any.whl (11 kB) | |
| Using cached tensorboard-2.10.1-py3-none-any.whl (5.9 MB) | |
| Using cached tensorflow_estimator-2.10.0-py2.py3-none-any.whl (438 kB) | |
| Using cached tensorflow_io_gcs_filesystem-0.37.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (5.1 MB) | |
| Using cached termcolor-2.4.0-py3-none-any.whl (7.7 kB) | |
| Using cached typing_extensions-4.12.2-py3-none-any.whl (37 kB) | |
| Using cached wrapt-1.16.0-cp39-cp39-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl (80 kB) | |
| Using cached packaging-24.1-py3-none-any.whl (53 kB) | |
| Using cached google_auth-2.35.0-py2.py3-none-any.whl (208 kB) | |
| Using cached google_auth_oauthlib-0.4.6-py2.py3-none-any.whl (18 kB) | |
| Using cached Markdown-3.7-py3-none-any.whl (106 kB) | |
| Using cached requests-2.32.3-py3-none-any.whl (64 kB) | |
| Using cached tensorboard_data_server-0.6.1-py3-none-manylinux2010_x86_64.whl (4.9 MB) | |
| Using cached tensorboard_plugin_wit-1.8.1-py3-none-any.whl (781 kB) | |
| Using cached werkzeug-3.0.4-py3-none-any.whl (227 kB) | |
| Using cached cachetools-5.5.0-py3-none-any.whl (9.5 kB) | |
| Using cached certifi-2024.8.30-py3-none-any.whl (167 kB) | |
| Using cached charset_normalizer-3.3.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (142 kB) | |
| Using cached idna-3.10-py3-none-any.whl (70 kB) | |
| Using cached importlib_metadata-8.5.0-py3-none-any.whl (26 kB) | |
| Using cached MarkupSafe-2.1.5-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (25 kB) | |
| Using cached pyasn1_modules-0.4.1-py3-none-any.whl (181 kB) | |
| Using cached requests_oauthlib-2.0.0-py2.py3-none-any.whl (24 kB) | |
| Using cached rsa-4.9-py3-none-any.whl (34 kB) | |
| Using cached urllib3-2.2.3-py3-none-any.whl (126 kB) | |
| Using cached oauthlib-3.2.2-py3-none-any.whl (151 kB) | |
| Using cached pyasn1-0.6.1-py3-none-any.whl (83 kB) | |
| Using cached zipp-3.20.2-py3-none-any.whl (9.2 kB) | |
| Installing collected packages: tensorboard-plugin-wit, libclang, keras, flatbuffers, zipp, wrapt, urllib3, typing-extensions, termcolor, tensorflow-io-gcs-filesystem, tensorflow-estimator, tensorboard-data-server, six, pyasn1, protobuf, packaging, oauthlib, numpy, MarkupSafe, idna, grpcio, gast, charset-normalizer, certifi, cachetools, absl-py, werkzeug, rsa, requests, pyasn1-modules, opt-einsum, keras-preprocessing, importlib-metadata, h5py, google-pasta, astunparse, requests-oauthlib, markdown, google-auth, google-auth-oauthlib, tensorboard, tensorflow | |
| Successfully installed MarkupSafe-2.1.5 absl-py-2.1.0 astunparse-1.6.3 cachetools-5.5.0 certifi-2024.8.30 charset-normalizer-3.3.2 flatbuffers-24.3.25 gast-0.4.0 google-auth-2.35.0 google-auth-oauthlib-0.4.6 google-pasta-0.2.0 grpcio-1.66.1 h5py-3.12.0 idna-3.10 importlib-metadata-8.5.0 keras-2.10.0 keras-preprocessing-1.1.2 libclang-18.1.1 markdown-3.7 numpy-1.24.0 oauthlib-3.2.2 opt-einsum-3.3.0 packaging-24.1 protobuf-3.19.6 pyasn1-0.6.1 pyasn1-modules-0.4.1 requests-2.32.3 requests-oauthlib-2.0.0 rsa-4.9 six-1.16.0 tensorboard-2.10.1 tensorboard-data-server-0.6.1 tensorboard-plugin-wit-1.8.1 tensorflow-2.10.0 tensorflow-estimator-2.10.0 tensorflow-io-gcs-filesystem-0.37.1 termcolor-2.4.0 typing-extensions-4.12.2 urllib3-2.2.3 werkzeug-3.0.4 wrapt-1.16.0 zipp-3.20.2 | |
| (tf2_10) ~/Downloads ❯❯❯ python3 -c "import tensorflow as tf; print(tf.config.list_physical_devices('GPU'))" | |
| 2024-09-25 14:32:13.091062: I tensorflow/core/platform/cpu_feature_guard.cc:193] This TensorFlow binary is optimized with oneAPI Deep Neural Network Library (oneDNN) to use the following CPU instructions in performance-critical operations: AVX2 FMA | |
| To enable them in other operations, rebuild TensorFlow with the appropriate compiler flags. | |
| 2024-09-25 14:32:13.162655: W tensorflow/stream_executor/platform/default/dso_loader.cc:64] Could not load dynamic library 'libcudart.so.11.0'; dlerror: libcudart.so.11.0: cannot open shared object file: No such file or directory | |
| 2024-09-25 14:32:13.162672: I tensorflow/stream_executor/cuda/cudart_stub.cc:29] Ignore above cudart dlerror if you do not have a GPU set up on your machine. | |
| 2024-09-25 14:32:13.181141: E tensorflow/stream_executor/cuda/cuda_blas.cc:2981] Unable to register cuBLAS factory: Attempting to register factory for plugin cuBLAS when one has already been registered | |
| 2024-09-25 14:32:13.649754: W tensorflow/stream_executor/platform/default/dso_loader.cc:64] Could not load dynamic library 'libnvinfer.so.7'; dlerror: libnvinfer.so.7: cannot open shared object file: No such file or directory | |
| 2024-09-25 14:32:13.649804: W tensorflow/stream_executor/platform/default/dso_loader.cc:64] Could not load dynamic library 'libnvinfer_plugin.so.7'; dlerror: libnvinfer_plugin.so.7: cannot open shared object file: No such file or directory | |
| 2024-09-25 14:32:13.649812: W tensorflow/compiler/tf2tensorrt/utils/py_utils.cc:38] TF-TRT Warning: Cannot dlopen some TensorRT libraries. If you would like to use Nvidia GPU with TensorRT, please make sure the missing libraries mentioned above are installed properly. | |
| 2024-09-25 14:32:14.058247: W tensorflow/stream_executor/platform/default/dso_loader.cc:64] Could not load dynamic library 'libcuda.so.1'; dlerror: libcuda.so.1: cannot open shared object file: No such file or directory | |
| 2024-09-25 14:32:14.058266: W tensorflow/stream_executor/cuda/cuda_driver.cc:263] failed call to cuInit: UNKNOWN ERROR (303) | |
| 2024-09-25 14:32:14.058276: I tensorflow/stream_executor/cuda/cuda_diagnostics.cc:156] kernel driver does not appear to be running on this host (cdiesh-Precision-7540): /proc/driver/nvidia/version does not exist | |
| [] | |
| (tf2_10) ~/Downloads ❯❯❯ pip install tensorflow_probability==0.18.0 transformers pyBigWig bio scikit-learn biopython bcbio-gff requests | |
| Collecting tensorflow_probability==0.18.0 | |
| Using cached tensorflow_probability-0.18.0-py2.py3-none-any.whl.metadata (13 kB) | |
| Collecting transformers | |
| Using cached transformers-4.45.0-py3-none-any.whl.metadata (44 kB) | |
| Collecting pyBigWig | |
| Using cached pyBigWig-0.3.23-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (19 kB) | |
| Collecting bio | |
| Using cached bio-1.6.2-py3-none-any.whl.metadata (5.1 kB) | |
| Collecting scikit-learn | |
| Using cached scikit_learn-1.5.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (13 kB) | |
| Collecting biopython | |
| Using cached biopython-1.84-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (12 kB) | |
| Collecting bcbio-gff | |
| Using cached bcbio_gff-0.7.1-py3-none-any.whl.metadata (343 bytes) | |
| Requirement already satisfied: requests in /home/cdiesh/miniconda3/envs/tf2_10/lib/python3.9/site-packages (2.32.3) | |
| Requirement already satisfied: absl-py in /home/cdiesh/miniconda3/envs/tf2_10/lib/python3.9/site-packages (from tensorflow_probability==0.18.0) (2.1.0) | |
| Requirement already satisfied: six>=1.10.0 in /home/cdiesh/miniconda3/envs/tf2_10/lib/python3.9/site-packages (from tensorflow_probability==0.18.0) (1.16.0) | |
| Requirement already satisfied: numpy>=1.13.3 in /home/cdiesh/miniconda3/envs/tf2_10/lib/python3.9/site-packages (from tensorflow_probability==0.18.0) (1.24.0) | |
| Collecting decorator (from tensorflow_probability==0.18.0) | |
| Using cached decorator-5.1.1-py3-none-any.whl.metadata (4.0 kB) | |
| Collecting cloudpickle>=1.3 (from tensorflow_probability==0.18.0) | |
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| Requirement already satisfied: gast>=0.3.2 in /home/cdiesh/miniconda3/envs/tf2_10/lib/python3.9/site-packages (from tensorflow_probability==0.18.0) (0.4.0) | |
| Collecting dm-tree (from tensorflow_probability==0.18.0) | |
| Using cached dm_tree-0.1.8-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (1.9 kB) | |
| Collecting filelock (from transformers) | |
| Using cached filelock-3.16.1-py3-none-any.whl.metadata (2.9 kB) | |
| Collecting huggingface-hub<1.0,>=0.23.2 (from transformers) | |
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| Requirement already satisfied: packaging>=20.0 in /home/cdiesh/miniconda3/envs/tf2_10/lib/python3.9/site-packages (from transformers) (24.1) | |
| Collecting pyyaml>=5.1 (from transformers) | |
| Using cached PyYAML-6.0.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (2.1 kB) | |
| Collecting regex!=2019.12.17 (from transformers) | |
| Using cached regex-2024.9.11-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (40 kB) | |
| Collecting tokenizers<0.21,>=0.20 (from transformers) | |
| Using cached tokenizers-0.20.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (6.7 kB) | |
| Collecting safetensors>=0.4.1 (from transformers) | |
| Using cached safetensors-0.4.5-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (3.8 kB) | |
| Collecting tqdm>=4.27 (from transformers) | |
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| Collecting mygene (from bio) | |
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| Collecting pandas (from bio) | |
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| Installing collected packages: pytz, dm-tree, tzdata, tqdm, threadpoolctl, scipy, safetensors, regex, pyyaml, python-dateutil, pyBigWig, platformdirs, joblib, fsspec, filelock, decorator, cloudpickle, biopython, tensorflow_probability, scikit-learn, pooch, pandas, huggingface-hub, gprofiler-official, biothings-client, bcbio-gff, tokenizers, mygene, transformers, bio | |
| Successfully installed bcbio-gff-0.7.1 bio-1.6.2 biopython-1.84 biothings-client-0.3.1 cloudpickle-3.0.0 decorator-5.1.1 dm-tree-0.1.8 filelock-3.16.1 fsspec-2024.9.0 gprofiler-official-1.0.0 huggingface-hub-0.25.1 joblib-1.4.2 mygene-3.2.2 pandas-2.2.3 platformdirs-4.3.6 pooch-1.8.2 pyBigWig-0.3.23 python-dateutil-2.9.0.post0 pytz-2024.2 pyyaml-6.0.2 regex-2024.9.11 safetensors-0.4.5 scikit-learn-1.5.2 scipy-1.13.1 tensorflow_probability-0.18.0 threadpoolctl-3.5.0 tokenizers-0.20.0 tqdm-4.66.5 transformers-4.45.0 tzdata-2024.2 | |
| (tf2_10) ~/Downloads ❯❯❯ cd lea | |
| cd: no such file or directory: lea | |
| (tf2_10) ~/Downloads ❯❯❯ cd lear ✘ 1 | |
| (tf2_10) ~/Downloads ❯❯❯ p Tiber ✘ 130 | |
| (tf2_10) ~/Tiberius ❯❯❯ cd learnMSA | |
| (tf2_10) ~/T/learnMSA ❯❯❯ pip install . | |
| Processing /home/cdiesh/Tiberius/learnMSA | |
| Installing build dependencies ... done | |
| Getting requirements to build wheel ... done | |
| Preparing metadata (pyproject.toml) ... done | |
| Requirement already satisfied: tensorflow<2.11,>=2.5.0 in /home/cdiesh/miniconda3/envs/tf2_10/lib/python3.9/site-packages (from learnMSA==2.0.1) (2.10.0) | |
| Requirement already satisfied: tensorflow-probability<=0.18.0 in /home/cdiesh/miniconda3/envs/tf2_10/lib/python3.9/site-packages (from learnMSA==2.0.1) (0.18.0) | |
| Collecting networkx (from learnMSA==2.0.1) | |
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| Collecting logomaker (from learnMSA==2.0.1) | |
| Using cached logomaker-0.8-py2.py3-none-any.whl.metadata (1.0 kB) | |
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| Using cached seaborn-0.13.2-py3-none-any.whl.metadata (5.4 kB) | |
| Requirement already satisfied: biopython>=1.69 in /home/cdiesh/miniconda3/envs/tf2_10/lib/python3.9/site-packages (from learnMSA==2.0.1) (1.84) | |
| Collecting pyfamsa (from learnMSA==2.0.1) | |
| Using cached pyfamsa-0.5.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (11 kB) | |
| Requirement already satisfied: transformers in /home/cdiesh/miniconda3/envs/tf2_10/lib/python3.9/site-packages (from learnMSA==2.0.1) (4.45.0) | |
| Collecting imageio (from learnMSA==2.0.1) | |
| Using cached imageio-2.35.1-py3-none-any.whl.metadata (4.9 kB) | |
| Collecting SentencePiece (from learnMSA==2.0.1) | |
| Using cached sentencepiece-0.2.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (7.7 kB) | |
| Requirement already satisfied: numpy in /home/cdiesh/miniconda3/envs/tf2_10/lib/python3.9/site-packages (from biopython>=1.69->learnMSA==2.0.1) (1.24.0) | |
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| Requirement already satisfied: packaging in /home/cdiesh/miniconda3/envs/tf2_10/lib/python3.9/site-packages (from tensorflow<2.11,>=2.5.0->learnMSA==2.0.1) (24.1) | |
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| Requirement already satisfied: termcolor>=1.1.0 in /home/cdiesh/miniconda3/envs/tf2_10/lib/python3.9/site-packages (from tensorflow<2.11,>=2.5.0->learnMSA==2.0.1) (2.4.0) | |
| Requirement already satisfied: typing-extensions>=3.6.6 in /home/cdiesh/miniconda3/envs/tf2_10/lib/python3.9/site-packages (from tensorflow<2.11,>=2.5.0->learnMSA==2.0.1) (4.12.2) | |
| Requirement already satisfied: wrapt>=1.11.0 in /home/cdiesh/miniconda3/envs/tf2_10/lib/python3.9/site-packages (from tensorflow<2.11,>=2.5.0->learnMSA==2.0.1) (1.16.0) | |
| Requirement already satisfied: decorator in /home/cdiesh/miniconda3/envs/tf2_10/lib/python3.9/site-packages (from tensorflow-probability<=0.18.0->learnMSA==2.0.1) (5.1.1) | |
| Requirement already satisfied: cloudpickle>=1.3 in /home/cdiesh/miniconda3/envs/tf2_10/lib/python3.9/site-packages (from tensorflow-probability<=0.18.0->learnMSA==2.0.1) (3.0.0) | |
| Requirement already satisfied: dm-tree in /home/cdiesh/miniconda3/envs/tf2_10/lib/python3.9/site-packages (from tensorflow-probability<=0.18.0->learnMSA==2.0.1) (0.1.8) | |
| Collecting pillow>=8.3.2 (from imageio->learnMSA==2.0.1) | |
| Using cached pillow-10.4.0-cp39-cp39-manylinux_2_28_x86_64.whl.metadata (9.2 kB) | |
| Collecting matplotlib (from logomaker->learnMSA==2.0.1) | |
| Using cached matplotlib-3.9.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (11 kB) | |
| Requirement already satisfied: pandas in /home/cdiesh/miniconda3/envs/tf2_10/lib/python3.9/site-packages (from logomaker->learnMSA==2.0.1) (2.2.3) | |
| Collecting scoring-matrices~=0.2.0 (from pyfamsa->learnMSA==2.0.1) | |
| Using cached scoring_matrices-0.2.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (8.8 kB) | |
| Collecting numpy (from biopython>=1.69->learnMSA==2.0.1) | |
| Using cached numpy-2.0.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (60 kB) | |
| Requirement already satisfied: filelock in /home/cdiesh/miniconda3/envs/tf2_10/lib/python3.9/site-packages (from transformers->learnMSA==2.0.1) (3.16.1) | |
| Requirement already satisfied: huggingface-hub<1.0,>=0.23.2 in /home/cdiesh/miniconda3/envs/tf2_10/lib/python3.9/site-packages (from transformers->learnMSA==2.0.1) (0.25.1) | |
| Requirement already satisfied: pyyaml>=5.1 in /home/cdiesh/miniconda3/envs/tf2_10/lib/python3.9/site-packages (from transformers->learnMSA==2.0.1) (6.0.2) | |
| Requirement already satisfied: regex!=2019.12.17 in /home/cdiesh/miniconda3/envs/tf2_10/lib/python3.9/site-packages (from transformers->learnMSA==2.0.1) (2024.9.11) | |
| Requirement already satisfied: requests in /home/cdiesh/miniconda3/envs/tf2_10/lib/python3.9/site-packages (from transformers->learnMSA==2.0.1) (2.32.3) | |
| Requirement already satisfied: tokenizers<0.21,>=0.20 in /home/cdiesh/miniconda3/envs/tf2_10/lib/python3.9/site-packages (from transformers->learnMSA==2.0.1) (0.20.0) | |
| Requirement already satisfied: safetensors>=0.4.1 in /home/cdiesh/miniconda3/envs/tf2_10/lib/python3.9/site-packages (from transformers->learnMSA==2.0.1) (0.4.5) | |
| Requirement already satisfied: tqdm>=4.27 in /home/cdiesh/miniconda3/envs/tf2_10/lib/python3.9/site-packages (from transformers->learnMSA==2.0.1) (4.66.5) | |
| Requirement already satisfied: wheel<1.0,>=0.23.0 in /home/cdiesh/miniconda3/envs/tf2_10/lib/python3.9/site-packages (from astunparse>=1.6.0->tensorflow<2.11,>=2.5.0->learnMSA==2.0.1) (0.44.0) | |
| Requirement already satisfied: fsspec>=2023.5.0 in /home/cdiesh/miniconda3/envs/tf2_10/lib/python3.9/site-packages (from huggingface-hub<1.0,>=0.23.2->transformers->learnMSA==2.0.1) (2024.9.0) | |
| Collecting contourpy>=1.0.1 (from matplotlib->logomaker->learnMSA==2.0.1) | |
| Using cached contourpy-1.3.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (5.4 kB) | |
| Collecting cycler>=0.10 (from matplotlib->logomaker->learnMSA==2.0.1) | |
| Using cached cycler-0.12.1-py3-none-any.whl.metadata (3.8 kB) | |
| Collecting fonttools>=4.22.0 (from matplotlib->logomaker->learnMSA==2.0.1) | |
| Using cached fonttools-4.54.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl.metadata (163 kB) | |
| Collecting kiwisolver>=1.3.1 (from matplotlib->logomaker->learnMSA==2.0.1) | |
| Using cached kiwisolver-1.4.7-cp39-cp39-manylinux_2_12_x86_64.manylinux2010_x86_64.whl.metadata (6.3 kB) | |
| Collecting pyparsing>=2.3.1 (from matplotlib->logomaker->learnMSA==2.0.1) | |
| Using cached pyparsing-3.1.4-py3-none-any.whl.metadata (5.1 kB) | |
| Requirement already satisfied: python-dateutil>=2.7 in /home/cdiesh/miniconda3/envs/tf2_10/lib/python3.9/site-packages (from matplotlib->logomaker->learnMSA==2.0.1) (2.9.0.post0) | |
| Collecting importlib-resources>=3.2.0 (from matplotlib->logomaker->learnMSA==2.0.1) | |
| Using cached importlib_resources-6.4.5-py3-none-any.whl.metadata (4.0 kB) | |
| Requirement already satisfied: pytz>=2020.1 in /home/cdiesh/miniconda3/envs/tf2_10/lib/python3.9/site-packages (from pandas->logomaker->learnMSA==2.0.1) (2024.2) | |
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| Requirement already satisfied: werkzeug>=1.0.1 in /home/cdiesh/miniconda3/envs/tf2_10/lib/python3.9/site-packages (from tensorboard<2.11,>=2.10->tensorflow<2.11,>=2.5.0->learnMSA==2.0.1) (3.0.4) | |
| Requirement already satisfied: charset-normalizer<4,>=2 in /home/cdiesh/miniconda3/envs/tf2_10/lib/python3.9/site-packages (from requests->transformers->learnMSA==2.0.1) (3.3.2) | |
| Requirement already satisfied: idna<4,>=2.5 in /home/cdiesh/miniconda3/envs/tf2_10/lib/python3.9/site-packages (from requests->transformers->learnMSA==2.0.1) (3.10) | |
| Requirement already satisfied: urllib3<3,>=1.21.1 in /home/cdiesh/miniconda3/envs/tf2_10/lib/python3.9/site-packages (from requests->transformers->learnMSA==2.0.1) (2.2.3) | |
| Requirement already satisfied: certifi>=2017.4.17 in /home/cdiesh/miniconda3/envs/tf2_10/lib/python3.9/site-packages (from requests->transformers->learnMSA==2.0.1) (2024.8.30) | |
| Requirement already satisfied: cachetools<6.0,>=2.0.0 in /home/cdiesh/miniconda3/envs/tf2_10/lib/python3.9/site-packages (from google-auth<3,>=1.6.3->tensorboard<2.11,>=2.10->tensorflow<2.11,>=2.5.0->learnMSA==2.0.1) (5.5.0) | |
| Requirement already satisfied: pyasn1-modules>=0.2.1 in /home/cdiesh/miniconda3/envs/tf2_10/lib/python3.9/site-packages (from google-auth<3,>=1.6.3->tensorboard<2.11,>=2.10->tensorflow<2.11,>=2.5.0->learnMSA==2.0.1) (0.4.1) | |
| Requirement already satisfied: rsa<5,>=3.1.4 in /home/cdiesh/miniconda3/envs/tf2_10/lib/python3.9/site-packages (from google-auth<3,>=1.6.3->tensorboard<2.11,>=2.10->tensorflow<2.11,>=2.5.0->learnMSA==2.0.1) (4.9) | |
| Requirement already satisfied: requests-oauthlib>=0.7.0 in /home/cdiesh/miniconda3/envs/tf2_10/lib/python3.9/site-packages (from google-auth-oauthlib<0.5,>=0.4.1->tensorboard<2.11,>=2.10->tensorflow<2.11,>=2.5.0->learnMSA==2.0.1) (2.0.0) | |
| Requirement already satisfied: zipp>=3.1.0 in /home/cdiesh/miniconda3/envs/tf2_10/lib/python3.9/site-packages (from importlib-resources>=3.2.0->matplotlib->logomaker->learnMSA==2.0.1) (3.20.2) | |
| Requirement already satisfied: importlib-metadata>=4.4 in /home/cdiesh/miniconda3/envs/tf2_10/lib/python3.9/site-packages (from markdown>=2.6.8->tensorboard<2.11,>=2.10->tensorflow<2.11,>=2.5.0->learnMSA==2.0.1) (8.5.0) | |
| Requirement already satisfied: MarkupSafe>=2.1.1 in /home/cdiesh/miniconda3/envs/tf2_10/lib/python3.9/site-packages (from werkzeug>=1.0.1->tensorboard<2.11,>=2.10->tensorflow<2.11,>=2.5.0->learnMSA==2.0.1) (2.1.5) | |
| Requirement already satisfied: pyasn1<0.7.0,>=0.4.6 in /home/cdiesh/miniconda3/envs/tf2_10/lib/python3.9/site-packages (from pyasn1-modules>=0.2.1->google-auth<3,>=1.6.3->tensorboard<2.11,>=2.10->tensorflow<2.11,>=2.5.0->learnMSA==2.0.1) (0.6.1) | |
| Requirement already satisfied: oauthlib>=3.0.0 in /home/cdiesh/miniconda3/envs/tf2_10/lib/python3.9/site-packages (from requests-oauthlib>=0.7.0->google-auth-oauthlib<0.5,>=0.4.1->tensorboard<2.11,>=2.10->tensorflow<2.11,>=2.5.0->learnMSA==2.0.1) (3.2.2) | |
| Using cached imageio-2.35.1-py3-none-any.whl (315 kB) | |
| Using cached logomaker-0.8-py2.py3-none-any.whl (11.8 MB) | |
| Using cached networkx-3.2.1-py3-none-any.whl (1.6 MB) | |
| Using cached pyfamsa-0.5.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (6.5 MB) | |
| Using cached seaborn-0.13.2-py3-none-any.whl (294 kB) | |
| Using cached sentencepiece-0.2.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (1.3 MB) | |
| Using cached matplotlib-3.9.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (8.3 MB) | |
| Using cached numpy-2.0.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (19.5 MB) | |
| Using cached pillow-10.4.0-cp39-cp39-manylinux_2_28_x86_64.whl (4.5 MB) | |
| Using cached scoring_matrices-0.2.2-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (437 kB) | |
| Using cached contourpy-1.3.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (321 kB) | |
| Using cached cycler-0.12.1-py3-none-any.whl (8.3 kB) | |
| Using cached fonttools-4.54.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (4.6 MB) | |
| Using cached importlib_resources-6.4.5-py3-none-any.whl (36 kB) | |
| Using cached kiwisolver-1.4.7-cp39-cp39-manylinux_2_12_x86_64.manylinux2010_x86_64.whl (1.6 MB) | |
| Using cached pyparsing-3.1.4-py3-none-any.whl (104 kB) | |
| Building wheels for collected packages: learnMSA | |
| Building wheel for learnMSA (pyproject.toml) ... done | |
| Created wheel for learnMSA: filename=learnMSA-2.0.1-py3-none-any.whl size=2998781 sha256=ce5455a36493ea4a7d6e2493bba66f7d9c209cf4ae0ef99c17b738fdd9f6f4d4 | |
| Stored in directory: /tmp/pip-ephem-wheel-cache-rwz7zatx/wheels/c0/c5/f3/78245b0bf0e632324a4979f3119683bf4fe785d4981222ad94 | |
| Successfully built learnMSA | |
| Installing collected packages: SentencePiece, scoring-matrices, pyparsing, pillow, numpy, networkx, kiwisolver, importlib-resources, fonttools, cycler, pyfamsa, imageio, contourpy, matplotlib, seaborn, logomaker, learnMSA | |
| Attempting uninstall: numpy | |
| Found existing installation: numpy 1.24.0 | |
| Uninstalling numpy-1.24.0: | |
| Successfully uninstalled numpy-1.24.0 | |
| Successfully installed SentencePiece-0.2.0 contourpy-1.3.0 cycler-0.12.1 fonttools-4.54.1 imageio-2.35.1 importlib-resources-6.4.5 kiwisolver-1.4.7 learnMSA-2.0.1 logomaker-0.8 matplotlib-3.9.2 networkx-3.2.1 numpy-2.0.2 pillow-10.4.0 pyfamsa-0.5.2 pyparsing-3.1.4 scoring-matrices-0.2.2 seaborn-0.13.2 | |
| (tf2_10) ~/T/learnMSA ❯❯❯ cd .. | |
| (tf2_10) ~/Tiberius ❯❯❯ python bin/tiberius.py --genome ~/Downloads/ncbi_dataset/data/GCF_027595985.1/GCF_027595985.1_mSorAra2.pri_genomic.fna --out output.gtf | |
| 2024-09-25 14:33:06.050665: I tensorflow/core/platform/cpu_feature_guard.cc:193] This TensorFlow binary is optimized with oneAPI Deep Neural Network Library (oneDNN) to use the following CPU instructions in performance-critical operations: AVX2 FMA | |
| To enable them in other operations, rebuild TensorFlow with the appropriate compiler flags. | |
| 2024-09-25 14:33:06.133192: W tensorflow/stream_executor/platform/default/dso_loader.cc:64] Could not load dynamic library 'libcudart.so.11.0'; dlerror: libcudart.so.11.0: cannot open shared object file: No such file or directory | |
| 2024-09-25 14:33:06.133210: I tensorflow/stream_executor/cuda/cudart_stub.cc:29] Ignore above cudart dlerror if you do not have a GPU set up on your machine. | |
| 2024-09-25 14:33:06.154690: E tensorflow/stream_executor/cuda/cuda_blas.cc:2981] Unable to register cuBLAS factory: Attempting to register factory for plugin cuBLAS when one has already been registered | |
| A module that was compiled using NumPy 1.x cannot be run in | |
| NumPy 2.0.2 as it may crash. To support both 1.x and 2.x | |
| versions of NumPy, modules must be compiled with NumPy 2.0. | |
| Some module may need to rebuild instead e.g. with 'pybind11>=2.12'. | |
| If you are a user of the module, the easiest solution will be to | |
| downgrade to 'numpy<2' or try to upgrade the affected module. | |
| We expect that some modules will need time to support NumPy 2. | |
| Traceback (most recent call last): File "/home/cdiesh/Tiberius/bin/tiberius.py", line 11, in <module> | |
| import tensorflow as tf | |
| File "/home/cdiesh/miniconda3/envs/tf2_10/lib/python3.9/site-packages/tensorflow/__init__.py", line 37, in <module> | |
| from tensorflow.python.tools import module_util as _module_util | |
| File "/home/cdiesh/miniconda3/envs/tf2_10/lib/python3.9/site-packages/tensorflow/python/__init__.py", line 37, in <module> | |
| from tensorflow.python.eager import context | |
| File "/home/cdiesh/miniconda3/envs/tf2_10/lib/python3.9/site-packages/tensorflow/python/eager/context.py", line 35, in <module> | |
| from tensorflow.python.client import pywrap_tf_session | |
| File "/home/cdiesh/miniconda3/envs/tf2_10/lib/python3.9/site-packages/tensorflow/python/client/pywrap_tf_session.py", line 19, in <module> | |
| from tensorflow.python.client._pywrap_tf_session import * | |
| AttributeError: _ARRAY_API not found | |
| A module that was compiled using NumPy 1.x cannot be run in | |
| NumPy 2.0.2 as it may crash. To support both 1.x and 2.x | |
| versions of NumPy, modules must be compiled with NumPy 2.0. | |
| Some module may need to rebuild instead e.g. with 'pybind11>=2.12'. | |
| If you are a user of the module, the easiest solution will be to | |
| downgrade to 'numpy<2' or try to upgrade the affected module. | |
| We expect that some modules will need time to support NumPy 2. | |
| Traceback (most recent call last): File "/home/cdiesh/Tiberius/bin/tiberius.py", line 11, in <module> | |
| import tensorflow as tf | |
| File "/home/cdiesh/miniconda3/envs/tf2_10/lib/python3.9/site-packages/tensorflow/__init__.py", line 37, in <module> | |
| from tensorflow.python.tools import module_util as _module_util | |
| File "/home/cdiesh/miniconda3/envs/tf2_10/lib/python3.9/site-packages/tensorflow/python/__init__.py", line 42, in <module> | |
| from tensorflow.python import data | |
| File "/home/cdiesh/miniconda3/envs/tf2_10/lib/python3.9/site-packages/tensorflow/python/data/__init__.py", line 21, in <module> | |
| from tensorflow.python.data import experimental | |
| File "/home/cdiesh/miniconda3/envs/tf2_10/lib/python3.9/site-packages/tensorflow/python/data/experimental/__init__.py", line 96, in <module> | |
| from tensorflow.python.data.experimental import service | |
| File "/home/cdiesh/miniconda3/envs/tf2_10/lib/python3.9/site-packages/tensorflow/python/data/experimental/service/__init__.py", line 419, in <module> | |
| from tensorflow.python.data.experimental.ops.data_service_ops import distribute | |
| File "/home/cdiesh/miniconda3/envs/tf2_10/lib/python3.9/site-packages/tensorflow/python/data/experimental/ops/data_service_ops.py", line 24, in <module> | |
| from tensorflow.python.data.experimental.ops import compression_ops | |
| File "/home/cdiesh/miniconda3/envs/tf2_10/lib/python3.9/site-packages/tensorflow/python/data/experimental/ops/compression_ops.py", line 16, in <module> | |
| from tensorflow.python.data.util import structure | |
| File "/home/cdiesh/miniconda3/envs/tf2_10/lib/python3.9/site-packages/tensorflow/python/data/util/structure.py", line 23, in <module> | |
| from tensorflow.python.data.util import nest | |
| File "/home/cdiesh/miniconda3/envs/tf2_10/lib/python3.9/site-packages/tensorflow/python/data/util/nest.py", line 36, in <module> | |
| from tensorflow.python.framework import sparse_tensor as _sparse_tensor | |
| File "/home/cdiesh/miniconda3/envs/tf2_10/lib/python3.9/site-packages/tensorflow/python/framework/sparse_tensor.py", line 24, in <module> | |
| from tensorflow.python.framework import constant_op | |
| File "/home/cdiesh/miniconda3/envs/tf2_10/lib/python3.9/site-packages/tensorflow/python/framework/constant_op.py", line 25, in <module> | |
| from tensorflow.python.eager import execute | |
| File "/home/cdiesh/miniconda3/envs/tf2_10/lib/python3.9/site-packages/tensorflow/python/eager/execute.py", line 23, in <module> | |
| from tensorflow.python.framework import dtypes | |
| File "/home/cdiesh/miniconda3/envs/tf2_10/lib/python3.9/site-packages/tensorflow/python/framework/dtypes.py", line 29, in <module> | |
| from tensorflow.python.lib.core import _pywrap_bfloat16 | |
| AttributeError: _ARRAY_API not found | |
| ImportError: numpy.core._multiarray_umath failed to import | |
| ImportError: numpy.core.umath failed to import | |
| Traceback (most recent call last): | |
| File "/home/cdiesh/Tiberius/bin/tiberius.py", line 11, in <module> | |
| import tensorflow as tf | |
| File "/home/cdiesh/miniconda3/envs/tf2_10/lib/python3.9/site-packages/tensorflow/__init__.py", line 37, in <module> | |
| from tensorflow.python.tools import module_util as _module_util | |
| File "/home/cdiesh/miniconda3/envs/tf2_10/lib/python3.9/site-packages/tensorflow/python/__init__.py", line 42, in <module> | |
| from tensorflow.python import data | |
| File "/home/cdiesh/miniconda3/envs/tf2_10/lib/python3.9/site-packages/tensorflow/python/data/__init__.py", line 21, in <module> | |
| from tensorflow.python.data import experimental | |
| File "/home/cdiesh/miniconda3/envs/tf2_10/lib/python3.9/site-packages/tensorflow/python/data/experimental/__init__.py", line 96, in <module> | |
| from tensorflow.python.data.experimental import service | |
| File "/home/cdiesh/miniconda3/envs/tf2_10/lib/python3.9/site-packages/tensorflow/python/data/experimental/service/__init__.py", line 419, in <module> | |
| from tensorflow.python.data.experimental.ops.data_service_ops import distribute | |
| File "/home/cdiesh/miniconda3/envs/tf2_10/lib/python3.9/site-packages/tensorflow/python/data/experimental/ops/data_service_ops.py", line 24, in <module> | |
| from tensorflow.python.data.experimental.ops import compression_ops | |
| File "/home/cdiesh/miniconda3/envs/tf2_10/lib/python3.9/site-packages/tensorflow/python/data/experimental/ops/compression_ops.py", line 16, in <module> | |
| from tensorflow.python.data.util import structure | |
| File "/home/cdiesh/miniconda3/envs/tf2_10/lib/python3.9/site-packages/tensorflow/python/data/util/structure.py", line 23, in <module> | |
| from tensorflow.python.data.util import nest | |
| File "/home/cdiesh/miniconda3/envs/tf2_10/lib/python3.9/site-packages/tensorflow/python/data/util/nest.py", line 36, in <module> | |
| from tensorflow.python.framework import sparse_tensor as _sparse_tensor | |
| File "/home/cdiesh/miniconda3/envs/tf2_10/lib/python3.9/site-packages/tensorflow/python/framework/sparse_tensor.py", line 24, in <module> | |
| from tensorflow.python.framework import constant_op | |
| File "/home/cdiesh/miniconda3/envs/tf2_10/lib/python3.9/site-packages/tensorflow/python/framework/constant_op.py", line 25, in <module> | |
| from tensorflow.python.eager import execute | |
| File "/home/cdiesh/miniconda3/envs/tf2_10/lib/python3.9/site-packages/tensorflow/python/eager/execute.py", line 23, in <module> | |
| from tensorflow.python.framework import dtypes | |
| File "/home/cdiesh/miniconda3/envs/tf2_10/lib/python3.9/site-packages/tensorflow/python/framework/dtypes.py", line 34, in <module> | |
| _np_bfloat16 = _pywrap_bfloat16.TF_bfloat16_type() | |
| TypeError: Unable to convert function return value to a Python type! The signature was | |
| () -> handle | |
| (tf2_10) ~/Tiberius ❯❯❯ |
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solution: run "pip install numpy==1.26.4"
xref https://stackoverflow.com/questions/78641150/a-module-that-was-compiled-using-numpy-1-x-cannot-be-run-in-numpy-2-0-0