gistfile1.txt

/usr/local/lib/python2.7/site-packages/sklearn/pls.py:7: DeprecationWarning: This module has been moved to cross_decomposition and will be removed in 0.16
  "removed in 0.16", DeprecationWarning)
......./usr/local/lib/python2.7/site-packages/scipy/sparse/linalg/eigen/arpack/arpack.py:1652: RuntimeWarning: invalid value encountered in sqrt
  s = np.sqrt(eigvals)
..../usr/local/lib/python2.7/site-packages/scipy/sparse/compressed.py:209: SparseEfficiencyWarning: Comparing a sparse matrix with a nonzero scalar using != is inefficient, try using == instead.
  " is inefficient, try using == instead.", SparseEfficiencyWarning)
E......................S.........................................../usr/local/lib/python2.7/site-packages/sklearn/manifold/spectral_embedding_.py:226: UserWarning: Graph is not fully connected, spectral embedding may not work as expected.
  warnings.warn("Graph is not fully connected, spectral embedding"
......./usr/local/lib/python2.7/site-packages/sklearn/covariance/graph_lasso_.py:193: RuntimeWarning: invalid value encountered in multiply
  * coefs)
/usr/local/lib/python2.7/site-packages/sklearn/covariance/graph_lasso_.py:195: RuntimeWarning: invalid value encountered in multiply
  * coefs)
....SS..............S.........................................................S........./usr/local/lib/python2.7/site-packages/sklearn/decomposition/fastica_.py:269: UserWarning: Ignoring n_components with whiten=False.
  warnings.warn('Ignoring n_components with whiten=False.')
.............................................../usr/local/lib/python2.7/site-packages/sklearn/decomposition/dict_learning.py:110: DeprecationWarning: coef_init is now ignored and will be removed in 0.15. See enet_path function.
  clf.fit(dictionary.T, X.T, coef_init=init)
/usr/local/lib/python2.7/site-packages/sklearn/decomposition/dict_learning.py:110: DeprecationWarning: coef_init is now ignored and will be removed in 0.15. See enet_path function.
  clf.fit(dictionary.T, X.T, coef_init=init)
/usr/local/lib/python2.7/site-packages/sklearn/decomposition/dict_learning.py:110: DeprecationWarning: coef_init is now ignored and will be removed in 0.15. See enet_path function.
  clf.fit(dictionary.T, X.T, coef_init=init)
/usr/local/lib/python2.7/site-packages/sklearn/decomposition/dict_learning.py:110: DeprecationWarning: coef_init is now ignored and will be removed in 0.15. See enet_path function.
  clf.fit(dictionary.T, X.T, coef_init=init)
../usr/local/lib/python2.7/site-packages/sklearn/decomposition/dict_learning.py:110: DeprecationWarning: coef_init is now ignored and will be removed in 0.15. See enet_path function.
  clf.fit(dictionary.T, X.T, coef_init=init)
/usr/local/lib/python2.7/site-packages/sklearn/decomposition/dict_learning.py:110: DeprecationWarning: coef_init is now ignored and will be removed in 0.15. See enet_path function.
  clf.fit(dictionary.T, X.T, coef_init=init)
/usr/local/lib/python2.7/site-packages/sklearn/decomposition/dict_learning.py:110: DeprecationWarning: coef_init is now ignored and will be removed in 0.15. See enet_path function.
  clf.fit(dictionary.T, X.T, coef_init=init)
/usr/local/lib/python2.7/site-packages/sklearn/decomposition/dict_learning.py:110: DeprecationWarning: coef_init is now ignored and will be removed in 0.15. See enet_path function.
  clf.fit(dictionary.T, X.T, coef_init=init)
/usr/local/lib/python2.7/site-packages/sklearn/decomposition/dict_learning.py:110: DeprecationWarning: coef_init is now ignored and will be removed in 0.15. See enet_path function.
  clf.fit(dictionary.T, X.T, coef_init=init)
...S........................................................SSS................................/usr/local/lib/python2.7/site-packages/sklearn/externals/joblib/test/test_func_inspect.py:122: UserWarning: Cannot inspect object <functools.partial object at 0x11070b8e8>, ignore list will not work.
  nose.tools.assert_equal(filter_args(ff, ['y'], (1, )),
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................FF..............................................................................................S........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................SSS....S....S..................................................................................................................
======================================================================
ERROR: sklearn.cluster.bicluster.tests.test_utils.test_get_submatrix
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/usr/local/lib/python2.7/site-packages/nose/case.py", line 197, in runTest
    self.test(*self.arg)
  File "/usr/local/lib/python2.7/site-packages/sklearn/cluster/bicluster/tests/test_utils.py", line 43, in test_get_submatrix
    assert_true(np.all(X != -1))
  File "/usr/local/Cellar/python/2.7.5/Frameworks/Python.framework/Versions/2.7/lib/python2.7/unittest/case.py", line 422, in assertTrue
    if not expr:
  File "/usr/local/lib/python2.7/site-packages/scipy/sparse/base.py", line 183, in __bool__
    raise ValueError("The truth value of an array with more than one "
ValueError: The truth value of an array with more than one element is ambiguous. Use a.any() or a.all().

======================================================================
FAIL: sklearn.feature_extraction.tests.test_image.test_connect_regions
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/usr/local/lib/python2.7/site-packages/nose/case.py", line 197, in runTest
    self.test(*self.arg)
  File "/usr/local/lib/python2.7/site-packages/sklearn/feature_extraction/tests/test_image.py", line 63, in test_connect_regions
    assert_equal(ndimage.label(mask)[1], connected_components(graph)[0])
AssertionError: 777 != 767

======================================================================
FAIL: sklearn.feature_extraction.tests.test_image.test_connect_regions_with_grid
----------------------------------------------------------------------
Traceback (most recent call last):
  File "/usr/local/lib/python2.7/site-packages/nose/case.py", line 197, in runTest
    self.test(*self.arg)
  File "/usr/local/lib/python2.7/site-packages/sklearn/feature_extraction/tests/test_image.py", line 70, in test_connect_regions_with_grid
    assert_equal(ndimage.label(mask)[1], connected_components(graph)[0])
AssertionError: 777 != 767

----------------------------------------------------------------------
Ran 1720 tests in 83.111s

FAILED (SKIP=15, errors=1, failures=2)