cthoyt

# /// script
# requires-python = ">=3.11"
# dependencies = [
#     "clinicaltrials-downloader>=0.0.2",
#     "pyobo[grounding]",
#     "tabulate",
#     "pystow",
#     "click",
# ]
#

cthoyt

# /// script
# requires-python = ">=3.11"
# dependencies = [
#     "beautifulsoup4",
#     "requests",
#     "yt-dlp",
# ]
# ///

"""Download chapters from Wind and Truth.

cthoyt

import json

import bioregistry

if __name__ == "__main__":
    r = json.load(open("mismatch.json"))
    with open("mismatches.sssom.tsv", "w") as file:
        print(
            "subject_id",
            "subject_label",

cthoyt

from typing import Any

from snapquery.snapquery_core import QueryName, NamedQueryManager, QueryBundle

#: See documentation at https://snapquery.bitplan.com/docs
API_ENDPOINT_FMT = "https://snapquery.bitplan.com/api/query/{domain}/{namespace}/{name}"

type Result = dict[str, Any]
type Results = list[Result]

cthoyt

import bioregistry
from pydantic.functional_validators import AfterValidator


def validate_local_identifier(prefix: str) -> AfterValidator:
    """Make a validator function based on a Bioregistry prefix.

    Example usage:

    .. code-block:: python

cthoyt

from tabulate import tabulate

import bioregistry

if __name__ == "__main__":
    rows = []
    for resource in bioregistry.resources():
        if resource.is_deprecated():
            continue
        if resource.get_contact():

cthoyt

import requests
from dateutil.parser import parse

res_json = requests.get(
  f'https://pypi.org/pypi/bioregistry/json', 
  headers={'Accept': 'application/json'}
).json()

releases = {
    parse(data[0]['upload_time']): version

cthoyt

cthoyt

import torch
from torch_max_mem import maximize_memory_utilization
import logging
import torch.mps
from humanize.filesize import naturalsize

logging.basicConfig(level=logging.DEBUG)


@maximize_memory_utilization()

cthoyt