Generate SSSOM for the negative mappings in the Bioregistry

bioregistry_negative_mappings.py

import json

import bioregistry

if __name__ == "__main__":
    r = json.load(open("mismatch.json"))
    with open("mismatches.sssom.tsv", "w") as file:
        print(
            "subject_id",
            "subject_label",
            "predicate_id",
            "predicate_modifier",
            "object_id",
            "object_label",
            "mapping_justification",
            "author_id",
            sep="\t",
            file=file,
        )
        for k, v in r.items():
            for metaprefix, value in v.items():
                print(
                    f"bioregistry:{k}",
                    bioregistry.get_name(k),
                    "skos:exactMatch",
                    "NOT",
                    f"{metaprefix}:{value}",
                    "",
                    "semapv:ManualMappingCuration",
                    "orcid:0000-0003-4423-4370",
                    sep="\t",
                    file=file,
                )