danielecook

IFS=$'\n'
for line in `cat fastq_list.tsv`; do
    zcat $line | head -n 1 | awk -v fname=$line -v OFS="\t" '{ print $0, fname}' >> fastq_headers.tsv
done

danielecook

wget -r --no-parent --reject ".*" ftp://[email protected]/bundle/hg19/

danielecook

[
	{ "keys": ["command+down"], "command": "plus_line", "args": {"lines": 10}},
	{ "keys": ["command+up"], "command": "minus_line", "args": {"lines": 10}},
]

danielecook

name: bamsurgeon
channels:
  - bioconda
  - conda-forge
  - defaults
dependencies:
  - python=2.7
  - bwa=0.7.17
  - picard==2.9.2
  - velvet==1.2.10

danielecook

# https://benjcunningham.org/blog/unnest-list-columns-in-pandas.html
import pandas as pd

def unnest(df, col):
    unnested = (df.apply(lambda x: pd.Series(x[col]), axis=1)
                .stack()
                .reset_index(level=1, drop=True))
    unnested.name = col
    return df.drop(col, axis=1).join(unnested)

danielecook

package main

/*
# <bitbar.title>Strava</bitbar.title>
# <bitbar.version>v0.0.1</bitbar.version>
# <bitbar.author>Daniel Cook</bitbar.author>
# <bitbar.author.github>danielecook</bitbar.author.github>
# <bitbar.desc>Bitbar Strava tracker</bitbar.desc>
*/

danielecook

SET GLOBAL general_log = 'ON';
SET GLOBAL general_log_file = "/Users/dancook/Documents/snippet-q/snippet-q/mysql.log";
SET GLOBAL log_output = 'FILE';

danielecook

import html
import requests
from bs4 import BeautifulSoup

def boolify(s):
    if s == 'True':
        return True
    if s == 'False':
        return False
    raise ValueError("huh?")

danielecook

    ✔ Alignment                                                  |    ✔ Anaconda                                              
    ✔ ayu                                                        |    ✔ Color Highlighter                                     
    ✔ Gist                                                       |    ✔ Git                                                   
    ✔ GitGutter                                                  |    ✔ Jinja2                                                
    ✔ LESS                                                       |    ✔ MarkdownEditing                                       
    ✔ Package Control                                            |    ✔ PackagesUI                                            
    ✔ Pretty JSON                                                |    ✔ Python 3                                              
    ✔ Python Improved                                            |    ✔ rainbow_csv                                           
    ✔ Se

danielecook

sudo launchctl load -w /System/Library/LaunchDaemons/com.apple.locate.plist
sudo /usr/libexec/locate.updatedb