Python datrie installation failure

gistfile1.txt

Building wheels for collected packages: connection-pool, datrie
  Building wheel for connection-pool (setup.py) ... done
  Created wheel for connection-pool: filename=connection_pool-0.0.3-py3-none-any.whl size=4062 sha256=3e72f96c62dc89f5af94648812515626414f510305e2ee911aadc70999a2f8fc
  Stored in directory: /home/babujee/.cache/pip/wheels/c6/4e/3d/7d5324ada36b1473e54d32916a8f70b90b62c9f2fedc9fd8c9
  Building wheel for datrie (pyproject.toml) ... error
  error: subprocess-exited-with-error

  × Building wheel for datrie (pyproject.toml) did not run successfully.
  │ exit code: 1
  ╰─> [44 lines of output]
      /tmp/pip-build-env-5pi_5juc/overlay/lib/python3.12/site-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'tests_require'
        warnings.warn(msg)
      running bdist_wheel
      running build
      running build_clib
      building 'datrie' library
      creating build/temp.linux-x86_64-cpython-312/libdatrie/datrie
      x86_64-linux-gnu-gcc -pthread -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ilibdatrie -c libdatrie/datrie/alpha-map.c -o build/temp.linux-x86_64-cpython-312/libdatrie/datrie/alpha-map.o
      libdatrie/datrie/alpha-map.c: In function ‘alpha_map_char_to_trie’:
      libdatrie/datrie/alpha-map.c:500:21: warning: comparison of integer expressions of different signedness: ‘TrieIndex’ {aka ‘int’} and ‘AlphaChar’ {aka ‘unsigned int’} [-Wsign-compare]
        500 |     if (alpha_begin <= ac && ac <= alpha_map->alpha_end)
            |                     ^~
      x86_64-linux-gnu-gcc -pthread -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ilibdatrie -c libdatrie/datrie/darray.c -o build/temp.linux-x86_64-cpython-312/libdatrie/datrie/darray.o
      libdatrie/datrie/darray.c: In function ‘da_fread’:
      libdatrie/datrie/darray.c:239:22: warning: comparison of integer expressions of different signedness: ‘TrieIndex’ {aka ‘int’} and ‘long unsigned int’ [-Wsign-compare]
        239 |     if (d->num_cells > SIZE_MAX / sizeof (DACell))
            |                      ^
      x86_64-linux-gnu-gcc -pthread -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ilibdatrie -c libdatrie/datrie/dstring.c -o build/temp.linux-x86_64-cpython-312/libdatrie/datrie/dstring.o
      x86_64-linux-gnu-gcc -pthread -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ilibdatrie -c libdatrie/datrie/fileutils.c -o build/temp.linux-x86_64-cpython-312/libdatrie/datrie/fileutils.o
      libdatrie/datrie/fileutils.c: In function ‘file_read_chars’:
      libdatrie/datrie/fileutils.c:103:52: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
        103 |     return (fread (buff, sizeof (char), len, file) == len);
            |                                                    ^~
      libdatrie/datrie/fileutils.c: In function ‘file_write_chars’:
      libdatrie/datrie/fileutils.c:109:53: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
        109 |     return (fwrite (buff, sizeof (char), len, file) == len);
            |                                                     ^~
      x86_64-linux-gnu-gcc -pthread -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ilibdatrie -c libdatrie/datrie/tail.c -o build/temp.linux-x86_64-cpython-312/libdatrie/datrie/tail.o
      libdatrie/datrie/tail.c: In function ‘tail_fread’:
      libdatrie/datrie/tail.c:144:22: warning: comparison of integer expressions of different signedness: ‘TrieIndex’ {aka ‘int’} and ‘long unsigned int’ [-Wsign-compare]
        144 |     if (t->num_tails > SIZE_MAX / sizeof (TailBlock))
            |                      ^
      x86_64-linux-gnu-gcc -pthread -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ilibdatrie -c libdatrie/datrie/trie-string.c -o build/temp.linux-x86_64-cpython-312/libdatrie/datrie/trie-string.o
      x86_64-linux-gnu-gcc -pthread -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ilibdatrie -c libdatrie/datrie/trie.c -o build/temp.linux-x86_64-cpython-312/libdatrie/datrie/trie.o
      x86_64-linux-gnu-gcc-ar rcs build/temp.linux-x86_64-cpython-312/libdatrie.a build/temp.linux-x86_64-cpython-312/libdatrie/datrie/alpha-map.o build/temp.linux-x86_64-cpython-312/libdatrie/datrie/darray.o build/temp.linux-x86_64-cpython-312/libdatrie/datrie/dstring.o build/temp.linux-x86_64-cpython-312/libdatrie/datrie/fileutils.o build/temp.linux-x86_64-cpython-312/libdatrie/datrie/tail.o build/temp.linux-x86_64-cpython-312/libdatrie/datrie/trie-string.o build/temp.linux-x86_64-cpython-312/libdatrie/datrie/trie.o
      running build_ext
      building 'datrie' extension
      creating build/temp.linux-x86_64-cpython-312/src
      x86_64-linux-gnu-gcc -pthread -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ilibdatrie -I/home/babujee/.virtualenvs/flu-ngs-env/include -I/usr/include/python3.12 -c src/datrie.c -o build/temp.linux-x86_64-cpython-312/src/datrie.o
      src/datrie.c:36:10: fatal error: Python.h: No such file or directory
         36 | #include "Python.h"
            |          ^~~~~~~~~~
      compilation terminated.
      error: command '/usr/bin/x86_64-linux-gnu-gcc' failed with exit code 1
      [end of output]

  note: This error originates from a subprocess, and is likely not a problem with pip.
  ERROR: Failed building wheel for datrie
Successfully built connection-pool
Failed to build datrie
ERROR: ERROR: Failed to build installable wheels for some pyproject.toml based projects (datrie)
babujee@IRI-Ubunu-VM ~/MilkSamples_NGS (dev) [1]>
babujee@IRI-Ubunu-VM ~/MilkSamples_NGS (dev) [1]>
babujee@IRI-Ubunu-VM ~/MilkSamples_NGS (dev) [1]>
babujee@IRI-Ubunu-VM ~/MilkSamples_NGS (dev) [1]>
babujee@IRI-Ubunu-VM ~/MilkSamples_NGS (dev) [1]>
babujee@IRI-Ubunu-VM ~/MilkSamples_NGS (dev) [1]>
babujee@IRI-Ubunu-VM ~/MilkSamples_NGS (dev) [1]> pip install datrie
Collecting datrie
  Using cached datrie-0.8.2.tar.gz (63 kB)
  Installing build dependencies ... done
  Getting requirements to build wheel ... done
  Installing backend dependencies ... done
  Preparing metadata (pyproject.toml) ... done
Building wheels for collected packages: datrie
  Building wheel for datrie (pyproject.toml) ... error
  error: subprocess-exited-with-error

  × Building wheel for datrie (pyproject.toml) did not run successfully.
  │ exit code: 1
  ╰─> [44 lines of output]
      /tmp/pip-build-env-wljc2jko/overlay/lib/python3.12/site-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'tests_require'
        warnings.warn(msg)
      running bdist_wheel
      running build
      running build_clib
      building 'datrie' library
      creating build/temp.linux-x86_64-cpython-312/libdatrie/datrie
      x86_64-linux-gnu-gcc -pthread -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ilibdatrie -c libdatrie/datrie/alpha-map.c -o build/temp.linux-x86_64-cpython-312/libdatrie/datrie/alpha-map.o
      libdatrie/datrie/alpha-map.c: In function ‘alpha_map_char_to_trie’:
      libdatrie/datrie/alpha-map.c:500:21: warning: comparison of integer expressions of different signedness: ‘TrieIndex’ {aka ‘int’} and ‘AlphaChar’ {aka ‘unsigned int’} [-Wsign-compare]
        500 |     if (alpha_begin <= ac && ac <= alpha_map->alpha_end)
            |                     ^~
      x86_64-linux-gnu-gcc -pthread -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ilibdatrie -c libdatrie/datrie/darray.c -o build/temp.linux-x86_64-cpython-312/libdatrie/datrie/darray.o
      libdatrie/datrie/darray.c: In function ‘da_fread’:
      libdatrie/datrie/darray.c:239:22: warning: comparison of integer expressions of different signedness: ‘TrieIndex’ {aka ‘
int’} and ‘long unsigned int’ [-Wsign-compare]
        239 |     if (d->num_cells > SIZE_MAX / sizeof (DACell))
            |                      ^
      x86_64-linux-gnu-gcc -pthread -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ilibdatrie -c libdatrie/datrie/dstring.c -o build/temp.linux-x86_64-cpython-312/libdatrie/datrie/dstring.o
      x86_64-linux-gnu-gcc -pthread -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ilibdatrie -c libdatrie/datrie/fileutils.c -o build/temp.linux-x86_64-cpython-312/libdatrie/datrie/fileutils.o
      libdatrie/datrie/fileutils.c: In function ‘file_read_chars’:
      libdatrie/datrie/fileutils.c:103:52: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘
long unsigned int’} and ‘int’ [-Wsign-compare]
        103 |     return (fread (buff, sizeof (char), len, file) == len);
            |                                                    ^~
      libdatrie/datrie/fileutils.c: In function ‘file_write_chars’:
      libdatrie/datrie/fileutils.c:109:53: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘
long unsigned int’} and ‘int’ [-Wsign-compare]
        109 |     return (fwrite (buff, sizeof (char), len, file) == len);
            |                                                     ^~
      x86_64-linux-gnu-gcc -pthread -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ilibdatrie -c libdatrie/datrie/tail.c -o build/temp.linux-x86_64-cpython-312/libdatrie/datrie/tail.o
      libdatrie/datrie/tail.c: In function ‘tail_fread’:
      libdatrie/datrie/tail.c:144:22: warning: comparison of integer expressions of different signedness: ‘TrieIndex’ {aka ‘int’} and ‘long unsigned int’ [-Wsign-compare]
        144 |     if (t->num_tails > SIZE_MAX / sizeof (TailBlock))
            |                      ^
      x86_64-linux-gnu-gcc -pthread -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ilibdatrie -c libdatrie/datrie/trie-string.c -o build/temp.linux-x86_64-cpython-312/libdatrie/datrie/trie-string.o
      x86_64-linux-gnu-gcc -pthread -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ilibdatrie -c libdatrie/datrie/trie.c -o build/temp.linux-x86_64-cpython-312/libdatrie/datrie/trie.o
      x86_64-linux-gnu-gcc-ar rcs build/temp.linux-x86_64-cpython-312/libdatrie.a build/temp.linux-x86_64-cpython-312/libdatrie/datrie/alpha-map.o build/temp.linux-x86_64-cpython-312/libdatrie/datrie/darray.o build/temp.linux-x86_64-cpython-312/libdatrie/datrie/dstring.o build/temp.linux-x86_64-cpython-312/libdatrie/datrie/fileutils.o build/temp.linux-x86_64-cpython-312/libdatrie/datrie/tail.o build/temp.linux-x86_64-cpython-312/libdatrie/datrie/trie-string.o build/temp.linux-x86_64-cpython-312/libdatrie/datrie/trie.o
      running build_ext
      building 'datrie' extension
      creating build/temp.linux-x86_64-cpython-312/src
      x86_64-linux-gnu-gcc -pthread -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -fPIC -Ilibdatrie -I/home/babujee/.virtualenvs/flu-ngs-env/include -I/usr/include/python3.12 -c src/datrie.c -o build/temp.linux-x86_64-cpython-312/src/datrie.o
      src/datrie.c:36:10: fatal error: Python.h: No such file or directory
         36 | #include "Python.h"
            |          ^~~~~~~~~~
      compilation terminated.
      error: command '/usr/bin/x86_64-linux-gnu-gcc' failed with exit code 1
      [end of output]

  note: This error originates from a subprocess, and is likely not a problem with pip.
  ERROR: Failed building wheel for datrie
Failed to build datrie
ERROR: ERROR: Failed to build installable wheels for some pyproject.toml based projects (datrie)

To get the "Python.h" header need to apt install python3.12-dev