Created
May 25, 2016 16:47
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example PCA
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| #run PCA | |
| pca.results <- prcomp(t(expression)) | |
| #vector of colors | |
| cols <- as.character(indata$Annotation) | |
| cols[cols=="K"] <- 'red' | |
| cols[cols=="LG"] <- 'lightgreen' | |
| cols[cols=="G"] <- 'darkgreen' | |
| #plot it | |
| plot(pca.results$x[,1], pca.results$x[,2], col=cols) |
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