- Modernizing existing molmicro workup database for extensibility:
- Training Tatyana on current state
- Architecting database schema and front end (specifications)
- refactoring of how results are represented
- designing API for bridge to current MySQLdb to enable incremental change
- working to refine custom taxonomic designations and integrate with NCBI tax hierarchy
- refinment and implementation of sequence database QA program, informed by outlier detection during database build
- creation of database for NGS worksheeting, tracking, and retrospective analysis
- Planning phase at the moment - architecture being built concurrently to (1) above
- developing NGS16S utility:
- exploration of ‘rule-in’ and limit-of-detection
- when Sanger sequencing information provides (or does not provide) indication
- differences with BCTPCR https://gitlab.labmed.uw.edu/molmicro/ngs_rulein_planning
- facilitation of interpretation:
- composite ‘super NTC’
- expansion of database and ad-hoc query functionality
- determining correlation of pre-test metrics (qiaxcel amp, lib quant) with NGS outcomes
- exploration of ‘rule-in’ and limit-of-detection
- departmental website
- working with GeneralUI to identify issues with CMS functionality and design solutions (end-user testing basically)
- copying of content from molmicdx site is serving as a testing framework
- working with gitlab ’boards’ for developing project management workflow
- experiment with agile model with Tatyana
Last active
November 11, 2016 00:24
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