OMERO basic setup for quick tests

.gitignore

omero_details.cfg
*.pyc

basics.py

#!/usr/bin/env python

import ConfigParser
import omero
from omero.gateway import BlitzGateway
# from copy import deepcopy

# OMERO Detail Config
omero_details = 'omero_details.cfg'
config = ConfigParser.RawConfigParser()
config.read(omero_details)
HOST = config.get('OMERODetails', 'host')
PORT = config.getint('OMERODetails', 'port')
USERNAME = config.get('OMERODetails', 'username')
PASSWORD = config.get('OMERODetails', 'password')

conn = BlitzGateway(USERNAME, PASSWORD, host=HOST, port=PORT)
connected = conn.connect()

if not connected:
    import sys
    sys.stderr.write("Error: Connection not available, please check your user name and password.\n")
    sys.exit(1)

# Set the desired group context
params = omero.sys.ParametersI()
conn.SERVICE_OPTS.setOmeroGroup(-1)

# Or for temporary params
# service_opts = deepcopy(conn.SERVICE_OPTS)
# service_opts.setOmeroGroup(-1)

# Get a specific object
# image1 = conn.getObject('Image', omero.rtypes.rlong(1))

# Get multiple objects
# images = conn.getObjects('Image')

# Run an HQL Query Projection to get a specific image
# q = """
#     select image.id
#     from Image image
#     where image.id=1
#     """
# qs = conn.getQueryService()
# for e in qs.projection(q, params, conn.SERVICE_OPTS):
#     print e[0].val