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@sashagusev
sashagusev / group_differences.R
Last active September 6, 2023 17:32
simple simulation of a phenotype in genetically distant populations
# reproducibility:
set.seed(42)
# number of causal variants:
M = 5e3
# number of individuals
N = 10e3
# heritability
hsq = 0.25
# sample individuals with admixture
@veekaybee
veekaybee / normcore-llm.md
Last active April 27, 2025 07:05
Normcore LLM Reads

Anti-hype LLM reading list

Goals: Add links that are reasonable and good explanations of how stuff works. No hype and no vendor content if possible. Practical first-hand accounts of models in prod eagerly sought.

Foundational Concepts

Screenshot 2023-12-18 at 10 40 27 PM

Pre-Transformer Models

@gaborcsardi
gaborcsardi / Pkgdown deploy from Travis.md
Last active November 17, 2021 13:41
Walkthrough: deploy a pkgdown site from Travis

Run usethis::use_pkgdown_travis()

usethis::use_pkgdown_travis()
✔ Setting active project to '/Users/gaborcsardi/works/ps'Adding 'docs/' to '.gitignore'Set up deploy keys by running `travis::use_travis_deploy()`Insert the following code in '.travis.yml'
  before_cache: Rscript -e 'remotes::install_cran("pkgdown")'

I spent a great deal of time trying to tweak the inputs to the function heatmaply::heatmaply() to produce a plot without guides/legends.

An easy solution lies in the function plotly::hide_guides. I just apply plotly::hide_guides() to the output of heatmaply::heatmaply() to get what I want.

@emitanaka
emitanaka / collapseoutput.js
Created July 20, 2019 04:43
Collapsible Code Output for `xaringan`
<script>
(function() {
var divHTML = document.querySelectorAll(".details-open");
divHTML.forEach(function (el) {
var preNodes = el.getElementsByTagName("pre");
var outputNode = preNodes[1];
outputNode.outerHTML = "<details open class='output'><summary>Output</summary>" + outputNode.outerHTML + "</details>";
})
})();
(function() {
Loading
Sorry, something went wrong. Reload?
Sorry, we cannot display this file.
Sorry, this file is invalid so it cannot be displayed.
@mpneuried
mpneuried / Makefile
Last active April 12, 2025 09:08
Simple Makefile to build, run, tag and publish a docker containier to AWS-ECR
# import config.
# You can change the default config with `make cnf="config_special.env" build`
cnf ?= config.env
include $(cnf)
export $(shell sed 's/=.*//' $(cnf))
# import deploy config
# You can change the default deploy config with `make cnf="deploy_special.env" release`
dpl ?= deploy.env
include $(dpl)
@conspect
conspect / cult_of_ignorance.md
Last active May 29, 2024 19:02
A Cult Of Ignorance, Isaac Asimov

It's hard to quarrel with that ancient justification of the free press: "America's right to know." It seems almost cruel to ask, ingeniously, "America's right to know what, please? Science? Mathematics? Economics? Foreign languages?"

None of those things, of course. In fact, one might well suppose that the popular feeling is that Americans are a lot better off without any of that tripe.

There is a cult of ignorance in the United States, and there always has been. The strain of anti-intellectualism has been a constant thread winding its way throughout political and cultural life, nurtured by the false notion that democracy means that "my ignorance is just as good as your knowledge."

Politicians have routinely striven to speak the language of Shakespeare and Milton as ungrammaticaly as possible in order to avoid offending their audiences by appearing to have gone to school. Thus, Adlai Stevenson, who incautiously allowed intelligence and learning and wit to peep out of his speeches, found the American people

@dogukancagatay
dogukancagatay / Makefile
Created June 27, 2014 18:14
Simple latex Makefile using latexmk
# Latex Makefile using latexmk
# Modified by Dogukan Cagatay <[email protected]>
# Originally from : http://tex.stackexchange.com/a/40759
#
# Change only the variable below to the name of the main tex file.
PROJNAME=main
# You want latexmk to *always* run, because make does not have all the info.
# Also, include non-file targets in .PHONY so they are run regardless of any
# file of the given name existing.