brentp

wget http://www.openbioinformatics.org/annovar/download/annovar.latest.tar.gz.mirror
tar xzvf annovar.tar.gz
cd annovar

# download databases (goes to UCSC)
./annotate_variation.pl -buildver hg19 -downdb 1000g2010nov humandb
./annotate_variation.pl -buildver hg19 -downdb avsift humandb
./annotate_variation.pl -buildver hg19 -downdb refGene humandb
./annotate_variation.pl -buildver hg19 -downdb mce46way humandb/
./annotate_variation.pl -buildver hg19 -downdb snp131 humandb/

MohamedAlaa

tmux shortcuts & cheatsheet

start new:

tmux

start new with session name:

tmux new -s myname

paulodeleo

# Make mouse useful in copy mode
setw -g mode-mouse on

# Allow mouse to select which pane to use
set -g mouse-select-pane on

# Allow mouse dragging to resize panes
set -g mouse-resize-pane on

# Allow mouse to select windows

briankung

Learning Object Oriented Python

I wrote this as a guide for a financial analyst friend of mine looking to learn Python. He is already fairly well versed in doing Project Euler problems in Ruby. All italicized text is for the benefit of any other readers, such as yourself.

Each section is divided into a short resource (10 minutes or less), a long resource (days to weeks or more), and a challenge.

~

So what you're looking to do is to be able to recreate financial models in code. And other types of models. This is a noble pursuit.

squarism

In the below keyboard shortcuts, I use the capital letters for reading clarity but this does not imply shift, if shift is needed, I will say shift. So ⌘ + D does not mean hold shift. ⌘ + Shift + D does of course.

Tabs and Windows

Function	Shortcut
New Tab	⌘ + T
Close Tab or Window	⌘ + W (same as many mac apps)
Go to Tab	⌘ + Number Key (ie: ⌘2 is 2nd tab)
Go to Split Pane by Direction	⌘ + Option + Arrow Key

ledell

### Kaggle Days SF: Hackathon submission (8th place) 

# I used the latest version of H2O (3.24.0.1)
# Latest stable always here: http://h2o-release.s3.amazonaws.com/h2o/latest_stable.html
# H2O 3.24.0.1: http://h2o-release.s3.amazonaws.com/h2o/rel-yates/1/index.html
# If you are a Python user, you can use the demo Python code available on the H2O AutoML User Guide 
# instead: http://docs.h2o.ai/h2o/latest-stable/h2o-docs/automl.html

# Unfortunately it was a private competition, so the data is not publicly available! 

wbgalvao

import os
import sys

import pandas as pd

from pyliftover import LiftOver


target = sys.argv[1]

demacdolincoln