I hereby claim:
- I am gijzelaerr on github.
- I am gijzelaerr (https://keybase.io/gijzelaerr) on keybase.
- I have a public key ASDu9Eo5IJqxsc2_UI3j7tNjlN6yrza03zaXuuqy-0uiqQo
To claim this, I am signing this object:
gijzelaerr
/ gist:e3c00083df98e520b2f2709edd31c5d4
Created
April 22, 2020 13:13
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| The CaraCal transpiled pipeline consists of the following parts: | |
| \begin{itemize} | |
| \item \textbf{untar.} This task decompresses the measurement set. | |
| \item \textbf{casa_listobs.} | |
| \item \textbf{casa_setjy.} | |
| \item \textbf{casa_gaincal.} This task performs a gain calibration. |
gijzelaerr
/ gist:25fda2528893e5d550c071a964390078
Last active
April 20, 2020 09:27
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| first start of app: | |
| A. organisation list | |
| | | |
| select organisation | |
| | | |
| B. server list | |
| | | |
| select server |
gijzelaerr
/ gist:1011528df850a766855ae0aaf247bd87
Created
April 10, 2020 12:19
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| etting up arvados-api-server (2.0.1-1) ... | |
| Assumption: nginx is configured to serve Rails from | |
| /var/www/arvados-api/current | |
| Assumption: nginx and passenger run as www-data | |
| Creating symlinks to configuration in /etc/arvados/api ...... done. | |
| Running bundle install...Gem::Ext::BuildError: ERROR: Failed to build gem native extension. | |
| current directory: |
gijzelaerr
/ gist:7faebd0d769b4707a0683dadeb6deb33
Created
April 10, 2020 12:15
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| etting up arvados-api-server (2.0.1-1) ... | |
| WARNING: Web service (Nginx or Apache) not found. | |
| To override, set the WEB_SERVICE environment variable to the name of the service | |
| hosting the Rails server. | |
| For Debian-based systems, then reconfigure this package with dpkg-reconfigure. | |
| For RPM-based systems, then reinstall this package. |
gijzelaerr
/ gist:fe0c8be75386bdaac471c24537a5bba8
Created
March 30, 2020 10:47
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| jsons.exceptions.DeserializationError: Could not deserialize value "{'T': {'T': {'T': {'T': {'T': {'T': {'T': {'T': {'T': {'T': {'T': {'T': {'T': {'T': {'T': {'T': {'T': {'T': {'T': {'T': {'T': {'T': {'T': {'T': {'T': {'T': {'T': {'T': {'T': {'T': {'T': {'T': {'T': {'T': {'T': {'T': {'T': {'T': {'T': {'T': {'T': {'T': {'T': {'T': {'T': {'T': {}, 'all': {}, 'any': {}, 'argmax': {}, 'argmin': {}, 'argsort': {}, 'astype': {}, 'base': [[1, '', 1234.0, 4321.0, 1, 10000.0, 5], [2, '', 2345.0, 5432.0, 2, 200000.0, 4], [3, '', 3456.0, 6543.0, 3, 300000.0, 3], [4, '', 4567.0, 7654.0, 4, 4000000.0, 4], [5, '', 5687.0, 8765.0, 5, 10000000.0, 7], [6, '', 5687.0, 8765.0, 6, 10000000.0, 7]], 'byteswap': {}, 'choose': {}, 'clip': {}, 'compress': {}, 'conj': {}, 'conjugate': {}, 'copy': {}, 'cumprod': {}, 'cumsum': {}}, 'all': {}, 'any': {}, 'argmax': {}, 'argmin': {}, 'argsort': {}, 'astype': {}, 'base': [[1, '', 1234.0, 4321.0, 1, 10000.0, 5], [2, '', 2345.0, 5432.0, 2, 200000.0, 4], [3, '', 3456.0, 6543.0, 3, 300000.0, 3] |
gijzelaerr
/ gist:24ee631811c671cd2e55ccb54c6017e4
Created
January 22, 2020 05:36
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| [1;30mINFO[0m /vault-ike/gijs/buis/.venv/bin/cwltool 1.0.20190906054215 | |
| [1;30mINFO[0m Resolved '/vault-ike/gijs/buis/scratch/repo/5/1GC-pipeline.cwl' to 'file:///vault-ike/gijs/buis/scratch/repo/5/1GC-pipeline.cwl' | |
| [1;30mWARNING[0m [33mWorkflow checker warning: | |
| scratch/repo/5/1GC-pipeline.cwl:233:7: Source 'caltable_out' of type ["null", "Directory"] may be | |
| incompatible | |
| scratch/repo/5/1GC-pipeline.cwl:284:7: with sink 'table' of type "Directory"[0m | |
| [1;30mINFO[0m [workflow ] start | |
| [1;30mINFO[0m [workflow ] starting step untar | |
| [1;30mINFO[0m [step untar] start |
gijzelaerr
/ gist:643aeed5ecfd71a9e3180444f88aeb88
Created
December 7, 2019 08:30
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| Traceback (most recent call last): | |
| File "/Users/gijs/Work/buis/.venv/lib/python3.7/site-packages/cwltool/workflow.py", line 639, in __init__ | |
| toolpath_object["run"], loadingContext) | |
| File "/Users/gijs/Work/buis/.venv/lib/python3.7/site-packages/cwltool/load_tool.py", line 371, in load_tool | |
| loadingContext, workflowobj, uri) | |
| File "/Users/gijs/Work/buis/.venv/lib/python3.7/site-packages/cwltool/load_tool.py", line 307, in resolve_and_validate_document | |
| schema.validate_doc(avsc_names, processobj, document_loader, loadingContext.strict) | |
| File "/Users/gijs/Work/buis/.venv/lib/python3.7/site-packages/schema_salad/schema.py", line 397, in validate_doc | |
| raise ValidationException("", None, anyerrors, "*") | |
| schema_salad.exceptions.ValidationException: scratch/repo/1/cwlfiles/casa_applycal.cwl:1:1: Object `scratch/repo/1/cwlfiles/casa_applycal.cwl` |
gijzelaerr
/ gist:db92f7a558300f32469413fdd78cbbc1
Created
November 25, 2019 10:19
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| pkg-gensymbols: warning: some new symbols appeared in the symbols file: see diff output below | |
| dpkg-gensymbols: warning: debian/libcasa-casa4/DEBIAN/symbols doesn't match completely debian/libcasa-casa4.symbols | |
| --- debian/libcasa-casa4.symbols (libcasa-casa4_3.2.1-1kern1_amd64) | |
| +++ dpkg-gensymbolsOPmwJY 2019-11-25 10:05:48.171920060 +0000 | |
| @@ -7969,6 +7969,7 @@ | |
| _ZN8casacore9objtestmvERmS0_S0_PKvS2_mmmS2_S2_mm@Base 3.2.1 | |
| _ZN8casacore9replicateERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEEm@Base 3.2.1 | |
| _ZN8casacore9replicateEcm@Base 3.2.1 | |
| + _ZN8casacore9transposeIiEENS_6MatrixIT_EERKS3_@Base 3.2.1-1kern1 | |
| _ZN8casacoreaaIbEENS_5ArrayIbEERKNS1_IT_EES6_@Base 3.2.1 |
gijzelaerr
/ O9-3.tex
Created
September 24, 2019 15:42
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| \documentclass[11pt,twoside]{article} | |
| \usepackage{asp2014} | |
| \aspSuppressVolSlug | |
| \resetcounters | |
| \bibliographystyle{asp2014} | |
| \markboth{Molenaar}{Easy to deploy and easy to modify data reduction pipelines using KERN and CWL} |
gijzelaerr
/ keybase.md
Created
August 22, 2019 08:16