icaoberg
/ example02.sh
Last active
February 3, 2020 23:20
— forked from arq5x/go.sh
[bedtools] Compute average scores for share intervals
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| # icaoberg - this example is fork that uses a bedtools in a Singularity container | |
| CONTAINER=../../singularity-bedtools.simg | |
| echo "chr1 10 50 10" > a.bed | |
| echo "chr1 20 40 20" > b.bed | |
| echo "chr1 30 33 30" > c.bed | |
| # Find the sub-intervals shared and unique to each file. | |
| if [ -f $CONTAINER ]; then | |
| singularity run --app bedtools $CONTAINER multiinter -i a.bed b.bed c.bed | column -t |
icaoberg
/ .gitignore
Last active
February 3, 2020 23:21
— forked from arq5x/make-master-hmm.sh
[bedtools] For Gemini: Create a master ChromHMM track from the 9 distinct cell types.
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| *.txt | |
| *.bedg |
icaoberg
/ pypistats.py
Created
August 26, 2014 19:25
— forked from Cairnarvon/pypistats.py
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| #!/usr/bin/env python | |
| import bz2 | |
| import datetime | |
| import os | |
| import sys | |
| import time | |
| import urllib2 | |
| import warnings |