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April 30, 2019 13:05
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freesurfer command to visualize the surface and the volume with defined edge colors
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| root=path/to/root | |
| cd $root | |
| sub=sub-01 | |
| freeview -v \ | |
| $sub/mri/T1.mgz \ | |
| $sub/mri/wm.mgz \ | |
| $sub/mri/brainmask.mgz \ | |
| $sub/mri/aseg.mgz:colormap=lut:opacity=0.2 \ | |
| -f \ | |
| $sub/surf/lh.white:edgecolor=blue \ | |
| $sub/surf/lh.pial:edgecolor=red \ | |
| $sub/surf/rh.white:edgecolor=blue \ | |
| $sub/surf/rh.pial:edgecolor=red |
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