Josh L. Espinoza jolespin

I like nature, coding, and rock climbing.

jolespin / plot_eteTree.py

Created March 28, 2020 19:29 — forked from fransua/plot_eteTree.py

use matplotlib to draw phylogenetic trees from ETE3

	from itertools import chain

	from matplotlib.collections import LineCollection
	from matplotlib import markers
	from matplotlib.path import Path

	import numpy as np

	from ete3 import Tree, NodeStyle

jolespin / lda_gibbs.py

Created October 5, 2016 23:57 — forked from mblondel/lda_gibbs.py

Latent Dirichlet Allocation with Gibbs sampler

	"""
	(C) Mathieu Blondel - 2010
	License: BSD 3 clause

	Implementation of the collapsed Gibbs sampler for
	Latent Dirichlet Allocation, as described in

	Finding scientifc topics (Griffiths and Steyvers)
	"""