julesghub

#!/bin/bash -l

#PBS -P m18
#PBS -q normal
#PBS -l ncpus=96
#PBS -l walltime=04:00:00
#PBS -l mem=80Gb
#PBS -l jobfs=2Gb
#PBS -l software=underworld
#PBS -l wd

julesghub

#!/bin/bash -l

# Installation script installing Underworld (baremetal) on Setonix
# A python virtual environment is made under your $PAWSEY_PROJECT directory, ie,
#     /software/projects/$PAWSEY_PROJECT/setonix/venv/py311

## installing latest uw2 on setonix
module load petsc/3.20.1-nocomplex py-pip/23.1.2-py3.11.6 py-h5py/3.8.0

# Now create a python virtual directory

julesghub

#!/usr/bin/env python3
# coding: utf-8

##from underworld.UWGeodynamics.surfaceProcesses import SedimentationThreshold
##from UWGeodynamics import visualisation as vis


import underworld as uw
from underworld import UWGeodynamics as GEO
from underworld import function as fn

julesghub

Guide to running Underworld3 on Gadi, baremetal only for now.

Log in and make sure your modulepath is good for Underworld custom modulefiles.

1. export MODULEPATH=/g/data/m18/modulefiles/:$MODULEPATH should be in your .bashrc.

2. module load underworld/dev_env - this DOESN"T load underworld3 but sets up an environment to compile and run the code on Gadi.

3. Pull down the code and compile Using pip directly to install the development version.

julesghub

#!/usr/bin/env python
# coding: utf-8

# In[3]:


import underworld as uw
from underworld import function as fn
import underworld.visualisation as vis
uw.utils.matplotlib_inline()

julesghub

• Jump on gadi with account the has write access to /d/gdata/m18/.
• Immediately start a tmux session to always remin connected.
• Load dependency modules. python, swig, petsc, etc.
• Initialise a virtualenv: python -m venv /g/data/m18/software/underworld/<version>
• Activate venv: source /g/data/m18/software/underworld/<version>/bin/activate
• install all python packages in this environment which is separate from the system python environment, include lavavu & badlands
• Write a correctponding modulefile in /g/data/m18/modulefiles/underworld/ that setups the runtime environment required to use the installation without activating the venv.

julesghub

julesghub

julesghub

julesghub

#!/bin/bash
#PBS -P BGH
#PBS -N UW_Run
#PBS -l select=1:ncpus=4:mem=3GB
#PBS -l walltime=00:20:00
#PBS -q defaultQ

source /project/RDS-FSC-BGH-RW/codes/UWGeodynamics_2.10.1.sh

cd $PBS_O_WORKDIR