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kozo2/bridgedbr.txt

Last active July 16, 2023 08:05
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bridgedbr.txt
> remove.packages("BridgeDbR")
> devtools::install_github("bridgedb/bridgedb-r", subdir="BridgeDbR")
> library("BridgeDbR")
> mapper = loadDatabase("./metabolites_20160412.bridge")
Error in .jcall("RJavaTools", "Ljava/lang/Object;", "invokeMethod", cl, :
org.bridgedb.IDMapperException: Could not connect to database
> mapper = loadDatabase("./metabolites_20160412.bridge.zip")
Error in .jcall("RJavaTools", "Ljava/lang/Object;", "invokeMethod", cl, :
org.bridgedb.IDMapperException: Could not connect to database
@egonw

egonw commented Aug 8, 2016

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OK, let me check...

@egonw

egonw commented Aug 8, 2016

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Confirmed... this is the exception I get now, which is different from yours, but can be the reason:

> db = loadDatabase("/home/egonw/Downloads/metabolites_20160412.bridge")
Error in .jcall("RJavaTools", "Ljava/lang/Object;", "invokeMethod", cl,  : 
  java.lang.IllegalArgumentException: No DataSource known for Cks

@egonw

egonw commented Aug 8, 2016

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I'll fix this asap! https://github.com/bridgedb/bridgedb-r/issues/1

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