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kozo2 / error_ids.txt
Last active May 21, 2025 07:12
HoloFoodR `getMetaboLights(mtblsid, cache.fir = "remove", output = "SE")` error ids
MTBLS1039
MTBLS12353
MTBLS11091
MTBLS10792
MTBLS1133
MTBLS1095
MTBLS11557
MTBLS1517
MTBLS1108
MTBLS1217
@kozo2
kozo2 / SandC.ahk
Last active January 20, 2025 03:53
#Requires AutoHotkey v2.0
Space::Send "{Space}"
Shift & Space::Send "+{Space}"
Space & a::Send "{Home}"
Space & b::Send "{Left}"
Space & c::Send "^c"
Space & d::Send "{Del}"
Space & e::Send "{End}"
@kozo2
kozo2 / rdf-doctor_output.txt
Created August 25, 2024 07:41
try rdf-doctor for MassBank.json [MassBank.ttl is converted from MassBank.json]
(base) knishida@anna:~$ rdf-doctor -i MassBank.ttl
25/08/2024 07:21:13 -- turtle:(not compressed)
PREFIX dcterms: <http://purl.org/dc/terms/>
PREFIX ns1: <http://schema.org/>
PREFIX xsd: <http://www.w3.org/2001/XMLSchema#>
PREFIX : <http://weso.es/shapes/>
:ChemicalSubstance [<https://massbank.eu/MassBank/>~] AND # 117732 instances. Instance example: 'https://massbank.eu/MassBank/RecordDisplay?id=MSBNK-HBM4EU-HB002846#ChemicalSubstance'
{
<http://www.w3.org/1999/02/22-rdf-syntax-ns#type> [ns1:ChemicalSubstance] ; # 100.0 % (117732 instances).
@kozo2
kozo2 / translations.md
Created August 19, 2024 15:46
https://community.crowdin.com/t/markdown-parser-problem-in-code-chunk/9557
source title teaching exercises
Rmd
Manipulation et analyse de données avec dplyr
75
75
@kozo2
kozo2 / source.md
Created August 19, 2024 15:43
https://community.crowdin.com/t/markdown-parser-problem-in-code-chunk/9557
source title teaching exercises
Rmd
Manipulating and analysing data with dplyr
75
75
@kozo2
kozo2 / MSBNK-RIKEN-PR010017.ttl
Last active April 19, 2024 07:36
@prefix : <http://example.org/rules/> .
@prefix chebi: <http://purl.obolibrary.org/obo/chebi/> .
@prefix ex: <http://example.org/> .
@prefix fnml: <http://semweb.mmlab.be/ns/fnml#> .
@prefix fno: <https://w3id.org/function/ontology#> .
@prefix idlab-fn: <http://example.com/idlab/function/> .
@prefix owl: <http://www.w3.org/2002/07/owl#> .
@prefix ql: <http://semweb.mmlab.be/ns/ql#> .
@prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .
@kozo2
kozo2 / error_in_fuseki.txt
Last active January 23, 2024 18:23
ChemFOnt version 1.0 OWL file import error
02:49:51 ERROR Fuseki :: [line: 70691, col: 99] {W002} <http://purl.obolibrary.org/obo/ChemFont.owl#Adrenal Gland> Code: 17/WHITESPACE in FRAGMENT: A single whitespace character. These match no grammar rules of URIs/IRIs.
@kozo2
kozo2 / docker-compose.yml
Created September 8, 2023 03:28
version: '3.9'
services:
R-notebook:
image: jupyter/r-notebook
ports:
- '8888:8888'
environment:
- JUPYTER_TOKEN=easy
- PASSWORD=easy
cytoscape-desktop:
@kozo2
kozo2 / RubyQuartoSlides.md
Last active August 28, 2023 04:11

  • Quartoとは?

    • 画像は quarto.org のスクリーンショット

  • Quartoの変換ができると何がうれしいのか？

  • Quartoはどのように使うものなのか？

    • コマンドラインラインツールとして使う。
    • 入力ipynbをpdfやword、ウェブサイトに変換できる

  • Quarto で ipynbをpdfやwordに変換できて何がうれしいのか？

    • 目次や図表へのクロスリファレンスを自動生成してくれる

  • クロスリファレンスとは何か？

@kozo2
kozo2 / pyopensci.md
Created August 18, 2023 08:07

Submitting Author: Kozo Nishida (@kozo2) All current maintainers: (@kozo2) Package Name: pywikipathways One-Line Description of Package: Python Client Package for the WikiPathways API Repository Link: https://github.com/kozo2/pywikipathways Version submitted: 0.0.2 Editor: TBD
Reviewer 1: TBD
Reviewer 2: TBD
Archive: TBD