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kozo2 / studyid_assayindex_afilename_mfilename.txt
Created March 27, 2026 06:17
output of https://gist.github.com/kozo2/0b7fa8d73e4839980a90ed3ab2115cb0
This file has been truncated, but you can view the full file.
ストリーミング出力は最後の 5000 行に切り捨てられました。
MTBLS396 7 a_MTBLS396_biol_OrbElite_P_mass_spectrometry.txt /nfs/public/rw/metabolomics/prod/data/studies/metadata-files/MTBLS396/m_MTBLS396_biol_OrbElite_P_mass_spectrometry_v2_maf.tsv
MTBLS396 8 a_MTBLS396_biol_OrbElite_N_mass_spectrometry.txt /nfs/public/rw/metabolomics/prod/data/studies/metadata-files/MTBLS396/m_MTBLS396_biol_OrbElite_N_mass_spectrometry_v2_maf.tsv
MTBLS396 9 a_MTBLS396_biol_QTRAP6500_P_mass_spectrometry.txt /nfs/public/rw/metabolomics/prod/data/studies/metadata-files/MTBLS396/m_MTBLS396_biol_QTRAP6500_P_mass_spectrometry_v2_maf.tsv
MTBLS396 10 a_MTBLS396_biol_QTRAP6500_N_mass_spectrometry.txt /nfs/public/rw/metabolomics/prod/data/studies/metadata-files/MTBLS396/m_MTBLS396_biol_QTRAP6500_N_mass_spectrometry_v2_maf.tsv
MTBLS396 11 a_MTBLS396_biol_QTOFG6550A_P_mass_spectrometry.txt /nfs/public/rw/metabolomics/prod/data/studies/metadata-files/MTBLS396/m_MTBLS396_biol_QTOFG6550A_P_mass_spectrometry_v2_maf.tsv
MTBLS396 12 a_MTBLS396_biol_QTOFG6550A_N_mass_spect
@kozo2
kozo2 / get_assayindex_maf.py
Created March 27, 2026 06:13
MetaboLights assay index and maf file names
import requests
url = "https://www.ebi.ac.uk/metabolights/ws/studies"
response = requests.get(url)
response.raise_for_status() # Raise an HTTPError for bad responses (4xx or 5xx)
studies = response.json()
mtbls_ids = data['content']
for study_id in mtbls_ids:
@kozo2
kozo2 / aminoacid_inchikeys.txt
Created July 9, 2025 03:54
CURLTUGMZLYLDI-UHFFFAOYSA-N
QGZKDVFQNNGYKY-UHFFFAOYSA-N
MEFKEPWMEQBLKI-AIRLBKTGSA-N
ZJUKTBDSGOFHSH-WFMPWKQPSA-N
LCTONWCANYUPML-UHFFFAOYSA-N
WHUUTDBJXJRKMK-VKHMYHEASA-N
KPGXRSRHYNQIFN-UHFFFAOYSA-N
KHPXUQMNIQBQEV-UHFFFAOYSA-N
DHMQDGOQFOQNFH-UHFFFAOYSA-N
QNAYBMKLOCPYGJ-REOHCLBHSA-N
@kozo2
kozo2 / deepwiki-mztabm2mtbls.md
Last active July 4, 2025 11:54
Please output the metadata mapping between mzTab-m and ISA-Tab used by this software in a tabular format.
@kozo2
kozo2 / error_ids.txt
Last active May 21, 2025 07:12
HoloFoodR `getMetaboLights(mtblsid, cache.fir = "remove", output = "SE")` error ids
MTBLS1039
MTBLS12353
MTBLS11091
MTBLS10792
MTBLS1133
MTBLS1095
MTBLS11557
MTBLS1517
MTBLS1108
MTBLS1217
@kozo2
kozo2 / SandC.ahk
Last active January 20, 2025 03:53
#Requires AutoHotkey v2.0
Space::Send "{Space}"
Shift & Space::Send "+{Space}"
Space & a::Send "{Home}"
Space & b::Send "{Left}"
Space & c::Send "^c"
Space & d::Send "{Del}"
Space & e::Send "{End}"
@kozo2
kozo2 / rdf-doctor_output.txt
Created August 25, 2024 07:41
try rdf-doctor for MassBank.json [MassBank.ttl is converted from MassBank.json]
(base) knishida@anna:~$ rdf-doctor -i MassBank.ttl
25/08/2024 07:21:13 -- turtle:(not compressed)
PREFIX dcterms: <http://purl.org/dc/terms/>
PREFIX ns1: <http://schema.org/>
PREFIX xsd: <http://www.w3.org/2001/XMLSchema#>
PREFIX : <http://weso.es/shapes/>
:ChemicalSubstance [<https://massbank.eu/MassBank/>~] AND # 117732 instances. Instance example: 'https://massbank.eu/MassBank/RecordDisplay?id=MSBNK-HBM4EU-HB002846#ChemicalSubstance'
{
<http://www.w3.org/1999/02/22-rdf-syntax-ns#type> [ns1:ChemicalSubstance] ; # 100.0 % (117732 instances).
@kozo2
kozo2 / translations.md
Created August 19, 2024 15:46
https://community.crowdin.com/t/markdown-parser-problem-in-code-chunk/9557
source Rmd
title Manipulation et analyse de données avec dplyr
teaching 75
exercises 75
@kozo2
kozo2 / source.md
Created August 19, 2024 15:43
https://community.crowdin.com/t/markdown-parser-problem-in-code-chunk/9557
source Rmd
title Manipulating and analysing data with dplyr
teaching 75
exercises 75
@kozo2
kozo2 / MSBNK-RIKEN-PR010017.ttl
Last active April 19, 2024 07:36
@prefix : <http://example.org/rules/> .
@prefix chebi: <http://purl.obolibrary.org/obo/chebi/> .
@prefix ex: <http://example.org/> .
@prefix fnml: <http://semweb.mmlab.be/ns/fnml#> .
@prefix fno: <https://w3id.org/function/ontology#> .
@prefix idlab-fn: <http://example.com/idlab/function/> .
@prefix owl: <http://www.w3.org/2002/07/owl#> .
@prefix ql: <http://semweb.mmlab.be/ns/ql#> .
@prefix rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> .
@prefix rdfs: <http://www.w3.org/2000/01/rdf-schema#> .