try rdf-doctor for MassBank.json [MassBank.ttl is converted from MassBank.json]

rdf-doctor_output.txt

(base) knishida@anna:~$ rdf-doctor -i MassBank.ttl
25/08/2024 07:21:13 -- turtle:(not compressed)
PREFIX dcterms: <http://purl.org/dc/terms/>
PREFIX ns1: <http://schema.org/>
PREFIX xsd: <http://www.w3.org/2001/XMLSchema#>
PREFIX : <http://weso.es/shapes/>

:ChemicalSubstance  [<https://massbank.eu/MassBank/>~]  AND   # 117732 instances.  Instance example: 'https://massbank.eu/MassBank/RecordDisplay?id=MSBNK-HBM4EU-HB002846#ChemicalSubstance'
{
   <http://www.w3.org/1999/02/22-rdf-syntax-ns#type>  [ns1:ChemicalSubstance]  ;          # 100.0 % (117732 instances).
   ns1:url  IRI  ;                                             # 100.0 % (117732 instances).
            # Node constraint example: 'https://massbank.eu/MassBank/RecordDisplay?id=MSBNK-HBM4EU-HB002948'
   ns1:chemicalComposition  xsd:string  ;                      # 100.0 % (117732 instances).
            # Node constraint example: 'C3H7NO3'
   ns1:hasBioChemEntityPart  @:MolecularEntity  ;              # 100.0 % (117732 instances).
            # Node constraint example: 'https://massbank.eu/MassBank/RecordDisplay?id=MSBNK-Eawag-EA005814#VHCNQEUWZYOAEV-UHFFFAOYSA-N'
   dcterms:conformsTo  @:CreativeWork  ;                       # 100.0 % (117732 instances).
            # Node constraint example: 'https://bioschemas.org/profiles/ChemicalSubstance/0.4-RELEASE'
   ns1:identifier  xsd:string  ;                               # 100.0 % (117732 instances).
            # Node constraint example: 'MSBNK-NaToxAq-NA001603'
   ns1:alternateName  xsd:string  +;                           # 100.0 % (117732 instances).
            # Node constraint example: 'Ritonavir'
            # 53.32534909795128 % (62781 instances). obj: xsd:string. Cardinality: {1}
            # 29.37009479156049 % (34578 instances). obj: xsd:string. Cardinality: {2}
            # 11.201712363673428 % (13188 instances). obj: xsd:string. Cardinality: {3}
   ns1:name  xsd:string                                        # 100.0 % (117732 instances).
            # Node constraint example: 'Malathion'
}


:MolecularEntity  [<https://massbank.eu/MassBank/>~]  AND   # 117732 instances.  Instance example: 'https://massbank.eu/MassBank/RecordDisplay?id=MSBNK-AAFC-AC000004#KWILGNNWGSNMPA-UHFFFAOYSA-N'
{
   <http://www.w3.org/1999/02/22-rdf-syntax-ns#type>  [ns1:MolecularEntity]  ;          # 100.0 % (117732 instances).
   ns1:url  IRI  ;                                             # 100.0 % (117732 instances).
            # Node constraint example: 'https://massbank.eu/MassBank/RecordDisplay?id=MSBNK-Chubu_Univ-UT000241'
   dcterms:conformsTo  @:CreativeWork  ;                       # 100.0 % (117732 instances).
            # Node constraint example: 'https://bioschemas.org/profiles/MolecularEntity/0.5-RELEASE'
   ns1:molecularFormula  xsd:string  ;                         # 100.0 % (117732 instances).
            # Node constraint example: 'C11H11N'
   ns1:monoisotopicMolecularWeight  xsd:double  ;              # 100.0 % (117732 instances).
            # Node constraint example: '578.526'
   ns1:name  xsd:string  ;                                     # 100.0 % (117732 instances).
            # Node constraint example: '3',5'-Cyclic CMP, cCMP, Cytidine-3',5'-cyclicmonophosphate'
   ns1:identifier  xsd:string  ;                               # 100.0 % (117732 instances).
            # Node constraint example: 'MSBNK-HBM4EU-HB001343'
   ns1:inChI  xsd:string  ?;
            # Node constraint example: 'InChI=1S/C19H22N2O/c1-2-11-9-21-17-8-14-12-5-3-4-6-16(12)20-19(14)18(21)7-13(11)15(17)10-22/h2-6,13,15,17-18,20,22H,7-10H2,1H3/b11-2+/t13-,15+,17+,18+/m1/s1'
            # 99.04613868786736 % (116609 instances). obj: xsd:string. Cardinality: {1}
   ns1:inChIKey  xsd:string  ?;
            # Node constraint example: 'RYYVLZVUVIJVGH-UHFFFAOYSA-N'
            # 98.81595488057623 % (116338 instances). obj: xsd:string. Cardinality: {1}
   ns1:smiles  xsd:string  ?;
            # Node constraint example: 'CC(CCC(=O)NCC(=O)O)C1CCC2C1(CCC3C2CCC4C3(CCC(C4)O)C)C'
            # 81.89956851153467 % (96422 instances). obj: xsd:string. Cardinality: {1}
   ns1:smiles  <http://www.w3.org/1999/02/22-rdf-syntax-ns#langString>  ?
            # Node constraint example: 'CC(CCC(=O)NCC(=O)O)C1CCC2C1(CCC3C2CCC4C3(CCC(C4)O)C)C'
            # 17.209424795297796 % (20261 instances). obj: <http://www.w3.org/1999/02/22-rdf-syntax-ns#langString>. Cardinality: {1}
}


:Dataset  [<https://massbank.eu/MassBank/>~]  AND   # 117732 instances.  Instance example: 'https://massbank.eu/MassBank/RecordDisplay?id=MSBNK-BAFG-CSL2311091868#Dataset'
{
   <http://www.w3.org/1999/02/22-rdf-syntax-ns#type>  [ns1:Dataset]  ;          # 100.0 % (117732 instances).
   ns1:datePublished  ns1:Date  ;                              # 100.0 % (117732 instances).
            # Node constraint example: '2023-11-09'
   ns1:citation  xsd:string  ;                                 # 100.0 % (117732 instances).
            # Node constraint example: ''
   ns1:description  xsd:string  ;                              # 100.0 % (117732 instances).
            # Node constraint example: 'This MassBank record with Accession MSBNK-Waters-WA001361 contains the MS mass spectrum of Acamprosate with the InChIkey AFCGFAGUEYAMAO-UHFFFAOYSA-N.'
   ns1:keywords  @<BNode>  ;                                   # 100.0 % (117732 instances).
            # Node constraint example: 'nc1a63166ee0e4a8ebce157cf8793c0bcb121397'
   ns1:identifier  xsd:string  ;                               # 100.0 % (117732 instances).
            # Node constraint example: 'MSBNK-Antwerp_Univ-AN116503'
   ns1:measurementTechnique  @<BNode>  ;                       # 100.0 % (117732 instances).
            # Node constraint example: 'nc1a63166ee0e4a8ebce157cf8793c0bcb233654'
   ns1:includedinDataCatalog  @<BNode>  ;                      # 100.0 % (117732 instances).
            # Node constraint example: 'nc1a63166ee0e4a8ebce157cf8793c0bcb559696'
   dcterms:conformsTo  @:CreativeWork  ;                       # 100.0 % (117732 instances).
            # Node constraint example: 'https://bioschemas.org/profiles/Dataset/1.0-RELEASE'
   ns1:url  IRI  ;                                             # 100.0 % (117732 instances).
            # Node constraint example: 'https://massbank.eu/MassBank/RecordDisplay?id=MSBNK-RIKEN_ReSpect-PS021102'
   ns1:license  IRI  ?;
            # Node constraint example: 'https://creativecommons.org/licenses/by/4.0/'
            # 99.873441375327 % (117583 instances). obj: IRI. Cardinality: {1}
   ns1:name  xsd:string  ?
            # Node constraint example: 'L-Threonine; LC-ESI-QQ; MS2; CE:10 V; [M-H]-'
            # 98.62059592973873 % (116108 instances). obj: xsd:string. Cardinality: {1}
}


:CreativeWork  [<https://bioschemas.org/profiles/>~]  AND   # 3 instances.  Instance example: 'https://bioschemas.org/profiles/MolecularEntity/0.5-RELEASE'
{
   <http://www.w3.org/1999/02/22-rdf-syntax-ns#type>  [ns1:CreativeWork]            # 100.0 % (3 instances).
}



(base) knishida@anna:~$ cd