Created
January 27, 2020 20:07
-
-
Save kozo2/225fd1efe7bcd8761009800797e36028 to your computer and use it in GitHub Desktop.
This file contains hidden or bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
root_node_df=getTableColumns('node') | |
root_edge_df=getTableColumns('edge') | |
# change networkforcus on GUI | |
gro_node_df=getTableColumns('node') | |
gro_edge_df=getTableColumns('edge') | |
new_node_df=bind_rows(roof_node_df, gro_node_df) | |
new_edge_df=bind_rows(roof_edge_df, gro_edge_df) | |
new_node_df %>% rename(id=SUID) -> foo | |
edges=data.frame(source=c(""), target=c(""), interaction=c("")) | |
edges %>% rename(source=id, target=id.1) -> edges | |
foo['id']=as.character(foo$id) # This is important!!! | |
foo %>% select(id, KEGG_NODE_X, KEGG_NODE_Y, KEGG_NODE_Z) -> nodes | |
createNetworkFromDataFrames(nodes,edges) |
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment