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Last active December 19, 2015 03:29
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PyCon 2013 APAC CfP
Raw
pycon.md

URL

http://www.e-cell.org
http://lbcs.e-cell.org

Organization

Riken, QBiC

Short biography

Koichi Takahashi is the leader of laboratory of biochemical simulation in Riken QBiC. He is also the leader of E-Cell project. E-Cell is a biochemical simulation platform written in Python and C++.

Profile photo URL

http://www.qbic.riken.jp/english/research/img/Takahashi200.jpg

Talk title

E-Cell biochemical simulation platform and Python

Abstract (around 30 words)

This talk will describe various Python techniques used in E-Cell biochemical simulation platform. It will also explain what the biochemical simulation is like and why we use Python.

28words.

Outline (around 200 words)

What is E-Cell? What is biochemical simulation?

I introduce E-Cell and what this biochemical simulation platform is like. E-Cell is written in C++ and Python. We use C++ for core simulation engines like ODE solver and stochastic simulators(gillespie, brownian dynamics, lattice simulator, particle simulator). On the other hand, for frontend like model(i.e. input data for simulator), visualizer(for simulation results), and controller(i.e. simulation pipeline editor), we use Python.

68words.

new technologies used in coming E-Cell4

Topic

Open Source Python projects / Science and Math

Timeslot

Standard 50min

Intended audience

Intermediate programmer

Language of talk

English

Video recording

Video recording OK

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