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| # IPI data from ftp://ftp.ebi.ac.uk/pub/databases/IPI/last_release/current/ipi.genes.MOUSE.xrefs.gz | |
| library(tidyverse) | |
| ipi_genes_MOUSE <- read.delim("ipi.genes.MOUSE.xrefs", "\t", escape_double = FALSE, col_names = FALSE, trim_ws = TRUE, skip = 1) | |
| ipi2ncbigene <- ipi_genes_MOUSE %>% select(9,10) %>% | |
| separate(X9, into=c("NCBI_GENEID", "GENE_NAME")) %>% | |
| separate_rows(X10) %>% | |
| filter(X10 != "") %>% | |
| drop_na(NCBI_GENEID) %>% | |
| distinct() |
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