Created
December 13, 2013 16:10
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[knishida@dhcp255-85]~% cytoscape-unix-3.2.0-SNAPSHOT/cytoscape.sh | |
_ | |
___ _ _| |_ ___ ___ ___ __ _ _ __ ___ | |
/ __| | | | __|/ _ \/ __|/ __|/ _` | '_ \ / _ \ | |
| (__| |_| | |_| (_) \__ \ (__| (_| | |_) | __/ | |
\___|\__, |\__|\___/|___/\___|\__,_| .__/ \___| | |
|___/ |_| | |
Cytoscape 3.2.0-SNAPSHOT | |
Hit '<tab>' for a list of available commands | |
and '[cmd] --help' for help on a specific command. | |
Hit '<ctrl-d>' or 'osgi:shutdown' to shutdown Cytoscape. | |
Cytoscape 3.2.0-SNAPSHOT> cytoscape:script python /Users/knishida/hoge.py | |
Cytoscape 3.2.0-SNAPSHOT> java.lang.NullPointerException | |
at org.cytoscape.scripting.internal.ExecuteScriptCommandTask.run(ExecuteScriptCommandTask.java:63) | |
at org.cytoscape.work.internal.task.TaskRunner.run(TaskManagerImpl.java:262) | |
at java.util.concurrent.Executors$RunnableAdapter.call(Executors.java:439) | |
at java.util.concurrent.FutureTask$Sync.innerRun(FutureTask.java:303) | |
at java.util.concurrent.FutureTask.run(FutureTask.java:138) | |
at java.util.concurrent.ThreadPoolExecutor$Worker.runTask(ThreadPoolExecutor.java:895) | |
at java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:918) | |
at java.lang.Thread.run(Thread.java:695) |
The problem is that you need to copy the jyphon jar file into the framework/../ext directory for anyone else (I think)
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I have this exact problem now. Do know what the cause is?