load_kegg.py

from java.io import File

KEGG_DIR = "/Users/kozo2/kegg/"

CARBOHYDRATE = "Carbohydrate"

pathwayids_for = { CARBOHYDRATE : ["00010", "00020", "00030", "00040", "00051", "00052", "00053", "00500", "00520", "00562", "00620", "00630", "00640", "00650", "00660"] }
ORGANISM = "eco"

loadNetworkTF = cyAppAdapter.get_LoadNetworkFileTaskFactory()
taskManager = cyAppAdapter.getTaskManager()

allTasks = None
for pathwayid in pathwayids_for[CARBOHYDRATE]:
    kgmlpath = File(KEGG_DIR + CARBOHYDRATE + "/" + ORGANISM + pathway + ".xml")
    print str(kgmlpath)
    itr = loadNetworkTF.createTaskIterator(kgmlpath)
    if allTasks is None:
        allTasks = itr
    else:
        allTasks.append(itr)

taskManager.execute(allTasks)