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kozo2/simple-uniprot.R

Last active June 12, 2016 13:46
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simple-uniprot.R
library(SPARQL) # SPARQL querying package
endpoint <- "http://sparql.uniprot.org/"
# create query statement
query <-
"
PREFIX up:<http://purl.uniprot.org/core/>
SELECT ?taxon
FROM <http://sparql.uniprot.org/taxonomy/>
WHERE
{
?taxon a up:Taxon .
}
"
qd <- SPARQL(endpoint,query)
df <- qd$results
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