kozo2/HowToUseCircleCI4cyautoRmd.md

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How to use CircleCI for cytoscape-automation/for-scripters/R/notebooks/

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HowToUseCircleCI4cyautoRmd.md

The goal

Automating the Rmd code chunk testing

How to use this

Check if there is an error in the git repo HEAD Rmds with the CircleCI badge etc.
The CircleCI runs all Rmds in https://github.com/cytoscape/cytoscape-automation/tree/master/for-scripters/R/notebooks and generate the report as HTML.
You can check the result HTML in the CircleCI ARTIFACTS tab.

We need to replace

knitr::opts_chunk$set(
  eval=FALSE
)

to

knitr::opts_chunk$set(
  eval=TRUE
)

in the all Rmds.

How can I update the CircleCI configulation?

You can update it with editing https://github.com/cytoscape/cytoscape-automation/blob/master/.circleci/config.yml

When will the CircleCI run?

Every time you commit https://github.com/cytoscape/cytoscape-automation, it will run.

What is the CircleCI badge status?

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