kwilcox

#!/usr/bin/env conda-execute
# coding=utf-8
"""
Testing netCDF4 garbage collection differences between 2.7 and 3.4

**Fails**
    - python 3.4 / netCDF4-python 1.2.1, 1.2.0, 1.1.9, and 1.1.8

**Passes**
    - python 3.4 / netCDF4-python 1.1.6

kwilcox

Frontiers in Ecology and the Environment, September, Vol. 13, No. 7 : 369-377
Arctic tundra fires: natural variability and responses to climate change
Feng Sheng Hu, Philip E Higuera, Paul Duffy, Melissa L Chipman, Adrian V Rocha, Adam M Young, Ryan Kelly, and Michael C Dietze
(doi: 10.1890/150063)

Frontiers in Ecology and the Environment, September, Vol. 13, No. 7 : 363-368
Filling the gaps: sensor network use and data-sharing practices in ecological research
Christine M Laney, Deana D Pennington, and Craig E Tweedie
(doi: 10.1890/140341)

kwilcox

wind_speed,depth=4.6 authority="wban",label="27516",lat=71.321,lon=-156.611,unit="m/s",value=2.682 1028854800000000000
wind_speed,depth=4.6 authority="wban",label="27516",lat=71.321,lon=-156.611,unit="m/s",value=2.682 1028858400000000000
wind_speed,depth=4.6 authority="wban",label="27516",lat=71.321,lon=-156.611,unit="m/s",value=2.682 1028862000000000000
wind_speed,depth=4.6 authority="wban",label="27516",lat=71.321,lon=-156.611,unit="m/s",value=2.682 1028865600000000000
wind_speed,depth=4.6 authority="wban",label="27516",lat=71.321,lon=-156.611,unit="m/s",value=2.682 1028869200000000000
wind_speed,depth=4.6 authority="wban",label="27516",lat=71.321,lon=-156.611,unit="m/s",value=2.235 1028872800000000000
wind_speed,depth=4.6 authority="wban",label="27516",lat=71.321,lon=-156.611,unit="m/s",value=2.235 1028876400000000000
wind_speed,depth=4.6 authority="wban",label="27516",lat=71.321,lon=-156.611,unit="m/s",value=1.788 1028880000000000000
wind_speed,depth=4.6 authority="wban",label="27516",lat=71.321,lon=-156.

kwilcox

kwilcox

$ python collect.py --projects BW2011 --output="./out"

2015-07-02 11:04:49 terrapin root[5654] DEBUG Could not find CF mapping for EPIC code 624
2015-07-02 11:04:49 terrapin root[5654] DEBUG Could not find CF mapping for EPIC code 624
2015-07-02 11:04:49 terrapin root[5654] DEBUG Could not find CF mapping for EPIC code 500
2015-07-02 11:04:49 terrapin root[5654] DEBUG Could not find CF mapping for EPIC code 502
2015-07-02 11:04:49 terrapin root[5654] INFO Translating /home/kwilcox/Development/usgs-cmg-portal/woods_hole_obs_data/download/9061ysi-a.nc into CF1.6 format: /home/kwilcox/Development/usgs-cmg-portal/woods_hole_obs_data/out/BW2011/9061ysi-a.nc
2015-07-02 11:04:49 terrapin root[5654] DEBUG Could not find CF mapping for EPIC code 500
2015-07-02 11:04:49 terrapin root[5654] DEBUG Could not find CF mapping for EPIC code 502
2015-07-02 11:04:49 terrapin root[5654] DEBUG Could not find CF mapping for EPIC code 624

kwilcox

(larva)kwilcox@terrapin:~/Development/paegan-transport (master)$ py.test -s -k test_run_from_multiple_files_without_cache
================================================================ test session starts ================================================================
platform linux2 -- Python 2.7.6 -- py-1.4.28 -- pytest-2.7.1
rootdir: /home/kwilcox/Development/paegan-transport, inifile: 
collected 106 items 

tests/test_model_controller.py test_model_controller.ModelControllerTest.test_run_from_multiple_files_without_cache
*** BaseModelController ***

            ***** Transport *****

kwilcox

upstream sciwms {
    server 127.0.0.1:{{sciwms_gunicorn_port}};
    keepalive 32;
}

server {
    listen          {{sciwms_nginx_port}};
    client_max_body_size    4G;
    keepalive_timeout       5;
    server_name             _;

kwilcox

(usgs_cmg)kwilcox@terrapin:woods_hole_obs_data$ python collect.py --download -p HURRIRENE_BB -f ./test_issue_51_download/ -o ./test_issue_51_output
2015-04-10 15:53:50 terrapin thredds_crawler[14577] INFO Crawling: http://geoport.whoi.edu/thredds/catalog/usgs/data2/emontgomery/stellwagen/Data/HURRIRENE_BB/catalog.xml
2015-04-10 15:53:51 terrapin thredds_crawler[14577] INFO Ignoring dataset based on 'selects'.  ID: usgs/data2/emontgomery/stellwagen/Data/HURRIRENE_BB/9141p-cal.cdf
2015-04-10 15:53:51 terrapin root[14577] INFO Found 3 datasets in HURRIRENE_BB!
2015-04-10 15:53:51 terrapin root[14577] INFO Found 3 TOTAL datasets!
2015-04-10 15:53:51 terrapin root[14577] INFO Downloading http://geoport.whoi.edu/thredds/fileServer/usgs/data2/emontgomery/stellwagen/Data/HURRIRENE_BB/9141wh-a.nc
2015-04-10 15:53:54 terrapin root[14577] INFO 9141wh-a.nc saved (1/3)
2015-04-10 15:53:54 terrapin root[14577] INFO Downloading http://geoport.whoi.edu/thredds/fileServer/usgs/data2/emontgomery/stellwagen/Data/HURRIRENE_BB/91

kwilcox

#!python
# coding=utf-8

metadata_codes = []
metadata_codes += [1215, 1216, 1217, 1218, 1219, 1220, 1404, 1411, 1412, 1413]  # Instrument and platform pitch/roll/orientation
metadata_codes += [9991, 9992, 9993, 9994]  # x/y/z/t axes
metadata_codes += [1207, 1208]  # ADCP records/pings
metadata_codes += [106]  # Battery voltage
metadata_codes += [4000, 40001, 40002, 4003, 4004, 4005, 4006]  # Rotor speed
metadata_codes += [106, 113, 114, 115]  # Battery voltage

kwilcox

[root@auth ~]# ipa host-find hassium.axiompvd
--------------
1 host matched
--------------
  Host name: hassium.axiompvd
  Principal name: host/hassium.axiompvd@AXIOM
  Password: False
  Keytab: True
  SSH public key fingerprint: xxxxxxxxxxxx root@hassium (ssh-dss), xxxxxxxxxxxxxx root@hassium (ecdsa-sha2-nistp256), xxxxxxxxxxxxx root@hassium (ssh-rsa)
----------------------------