caseywdunn

Docker cheat sheet

Introduction

Docker is a tool for bundling together applications and their dependencies into images that can than be run as containers on many different types of computers.

Docker and other containerization tools are useful to scientists because:

• It greatly simplifies distribution and installation of complex work flows that

peci1

#!/usr/bin/env python
#-*- coding: utf-8 -*-

import sys, os
import re

try:    bibtexdb = open(sys.argv[1]).read()
except: print "Error: specify the file to be processed!"

if not os.path.isfile('journalList.txt'):

hrldcpr

One-line Tree in Python

Using Python's built-in defaultdict we can easily define a tree data structure:

def tree(): return defaultdict(tree)

That's it!

brantfaircloth

##GTR lset applyto=() nst=6 # GTR lset applyto=() nst=6 rates=propinv # GTR + I lset applyto=() nst=6 rates=gamma # GTR + gamma lset applyto=() nst=6 rates=invgamma # GTR + I + gamma

##SYM

lset applyto=() nst=6                           # SYM

prset applyto=() statefreqpr=fixed(equal)