XRelease demo config

xrelease-demo-cfg.yaml

# parts of this extended COL checklist configuration was copied from the backbone configs:
# https://github.com/gbif/gbif-configuration/blob/master/cli/nub/config/clb-nub.yaml

# dataset metadata with project variables to be applied to each release
alias: "MD-{attempt}"
title: Merge Demo
version: "{attempt}"

# taxon to use for incertae sedis names during merges
incertaeSedis:
  name: incertae sedis
  rank: unranked
  status: PROVISIONALLY_ACCEPTED
  classification: 
    - 
      name: Biota
      rank: unranked

removeEmptyGenera: false

# activate the homotypic grouping?
groupBasionyms: true

issueExclusion:
- UNPARSABLE_NAME
- UNPARSABLE_AUTHORSHIP
- NULL_EPITHET
- INDETERMINED
- HIGHER_RANK_BINOMIAL
- MISSING_GENUS
- INCONSISTENT_NAME

blockedNames:
  - Diptera larva
  - Flowering plant
  - Gen # https://github.com/gbif/checklistbank/issues/230
  - Gen sp
  - Gen spec
  - Grey lichens
  - Incertae  # https://github.com/gbif/portal-feedback/issues/1845
  - Lichens
  - Lower plants (Lichens)
  - Scientific # https://github.com/gbif/portal-feedback/issues/2726
  - Scientific name
  - Status unresolved
  - Strawberry witches phytoplasma
  - Unaccepted  
  - Unknown


# List of regular expression patterns for scientific names that are globally blocked from any source.
# Patterns are case insensitive and must not be anchored at the front. Any match will block the name.
# Because of how YAML treats backslashes in double-quoted strings, note that all backslashes in a regex expression must be escaped when using double quotes. 
# For example, all of these are valid:
#   expression: \w*
#   expression: '\w*'
#   expression: "\\w*"
# Best to avoid using double quotes!
blockedNamePatterns:
 - '^\? [a-z]+'


# epithets keyed by family
basionymExclusions:
  Squalidae:
    - mahia
  Nymphalidae:
    - mylitta # https://github.com/gbif/portal-feedback/issues/4332


# Wrong homonyms above species rank that should be excluded from the backbone, regardless of which source they came from.
# List of canonical names with its direct parent to identifiy the version to be removed.
# All other names with the same canonical name, but different parent, are kept.
homonymExclusions:
  # order
  Diplomonadida:
    - Eopharyngea
  Piroplasmida:
    - Miozoa