Created
August 22, 2023 08:00
-
-
Save mdoering/caca9b11bef29bfb934f5bf5e50a2765 to your computer and use it in GitHub Desktop.
nub config 2023
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| autoImport: true | |
| validate: false | |
| runAssertions: false | |
| groupBasionyms: true | |
| keepLonelyAutonyms: false | |
| keepEmptyImplicitNames: false | |
| blacklist: | |
| - Calendrella cinerea ongumaensis # https://github.com/gbif/checklistbank/issues/47 | |
| - Tricholaema leucomelan namaqua # https://github.com/gbif/checklistbank/issues/46 | |
| - Hirundo D'Orbigny & Lafresnaye, 1838 # https://github.com/gbif/portal-feedback/issues/3250 | |
| - Unaccepted | |
| - Incertae # https://github.com/gbif/portal-feedback/issues/1845 | |
| - Scientific # https://github.com/gbif/portal-feedback/issues/2726 | |
| - Scientific name | |
| - Flowering plant | |
| - Strawberry witches phytoplasma | |
| - Grey lichens | |
| - Lichens | |
| - Lower plants (Lichens) | |
| - Diptera larva | |
| - Gen # https://github.com/gbif/checklistbank/issues/230 | |
| - Gen sp | |
| - Gen spec | |
| - Sedum rupestre Hacq. ex Nyman, 1879 # https://github.com/gbif/checklistbank/issues/233 | |
| - Polistes gen. Fuscopolistes Fuscopolistes # https://github.com/gbif/portal-feedback/issues/4750 | |
| - Polistes (Fuscopolistes) Fuscopolistes # https://github.com/gbif/portal-feedback/issues/4750 | |
| - Hyla QUOYI – HYLA PRASINA CASE # https://github.com/gbif/checklistbank/issues/273 | |
| - Phimenes de Saussure, 1855 # https://github.com/gbif/portal-feedback/issues/4749 | |
| - Strophorus burrelli Hoser, 2005 # https://github.com/gbif/portal-feedback/issues/4530 | |
| - Strophorus Fitzinger, 1843 | |
| sources: | |
| - key: daacce49-b206-469b-8dc2-2257719f3afa # GBIF Backbone Patch | |
| rank: KINGDOM | |
| homonyms: true | |
| unranked: true | |
| - key: 7ea21580-4f06-469d-995b-3f713fdcc37c # GBIF Algae Classification | |
| rank: PHYLUM | |
| - key: 484039df-cd14-46d1-9a41-c406db8c7ced # Alucitoidea Hobern | |
| rank: PHYLUM | |
| - key: c815ecb1-b036-4617-b545-1bb65e0339cd # Pterophoroidea Hobern | |
| rank: PHYLUM | |
| - key: 7be186c4-5572-44e6-9f11-69ddbfd95078 # Hominidae | |
| rank: PHYLUM | |
| - key: a97f36e5-ded1-49cc-bdec-ac6170fc7b9c # Genome Taxonomy Database | |
| rank: PHYLUM | |
| OTU: true | |
| nameTypeMapping: | |
| HYBRID: OTU | |
| BLACKLISTED: OTU | |
| DOUBTFUL: OTU | |
| NO_NAME: OTU | |
| INFORMAL: OTU | |
| - key: aa1bc573-f338-482d-b6aa-f371d57f20f5 # Genome Taxonomy Database supplement | |
| rank: PHYLUM | |
| OTU: true | |
| nameTypeMapping: | |
| HYBRID: OTU | |
| BLACKLISTED: OTU | |
| DOUBTFUL: OTU | |
| NO_NAME: OTU | |
| INFORMAL: OTU | |
| - key: 7ddf754f-d193-4cc9-b351-99906754a03b # Catalogue of Life | |
| rank: KINGDOM | |
| homonyms: true | |
| exclude: | |
| - name: Bacteria # follow GTDB instead | |
| rank: KINGDOM | |
| - name: Archaea # follow GTDB instead | |
| rank: KINGDOM | |
| - key: 80dd9c94-241b-4d49-999f-c89de7648525 # World Spider Catalog | |
| scope: | |
| name: Arachnida | |
| rank: CLASS | |
| - key: f382f0ce-323a-4091-bb9f-add557f3a9a2 # World Checklist of Vascular Plants | |
| scope: | |
| name: Plantae | |
| rank: KINGDOM | |
| - key: 52a423d2-0486-4e77-bcee-6350d708d6ff # Prokaryotic Nomenclature Up-to-date | |
| - key: e01b0cbb-a10a-420c-b5f3-a3b20cc266ad # ICTV Master Species List | |
| - key: 47f16512-bf31-410f-B272-d151c996b2f6 # The Clements Checklist | |
| scope: | |
| name: Aves | |
| rank: CLASS | |
| - key: c696e5ee-9088-4d11-bdae-ab88daffab78 # IOC World Bird Names | |
| scope: | |
| name: Aves | |
| rank: CLASS | |
| - key: 47a779a6-a230-4edd-b787-19c3d2c80ab5 # Species Files ORG | |
| - key: 994e75fa-b187-4b07-a30e-665f4acbe394 # Myriatrix | |
| scope: | |
| name: Arthropoda | |
| rank: PHYLUM | |
| exclude: | |
| - name: Deleted taxa | |
| rank: UNRANKED | |
| - key: 763a8aa3-65de-443e-bd20-bbe958a1ef74 # New Zealand Marine Macroalgae | |
| rank: FAMILY | |
| - key: 2d59e5db-57ad-41ff-97d6-11f5fb264527 # World Register of Marine Species | |
| - key: f43069fe-38c1-43e3-8293-37583dcf5547 # Danish Mycological Society - Checklist of Fungi | |
| scope: | |
| name: Fungi | |
| rank: KINGDOM | |
| - key: a43ec6d8-7b8a-4868-ad74-56b824c75698 # Fungi, flora and fauna of Madeira and Selvagens | |
| - key: da38f103-4410-43d1-b716-ea6b1b92bbac # Catalogue of Afrotropical Bees | |
| - key: ded724e7-3fde-49c5-bfa3-03b4045c4c5f # EDIT Cichorieae | |
| - key: 56c83fd9-533b-4b77-a67a-cf521816866e # Catalogue of Tenebrionidae (Coleoptera) of North America | |
| - key: 7a9bccd4-32fc-420e-a73b-352b92267571 # Checklist of Beetles (Coleoptera) of Canada and Alaska. Second Edition. | |
| - key: e768b669-5f12-42b3-9bc7-ede76e4436fa # Carabodes cephalotes | |
| - key: e402255a-aed1-4701-9b96-14368e1b5d6b # World Typhlocybinae database | |
| - key: 96dfd141-7bca-4f82-9325-4420d24e0793 # Spinnengids | |
| - key: 65c9103f-2fbf-414b-9b0b-e47ca96c5df2 # Afromoths | |
| - key: bd25fbf7-278f-41d6-bc17-9f08f2632f70 # True Fruit Flies of the Afrotropical Region | |
| - key: 1a540a73-a60d-4816-bff6-b1ac74b598c9 # DiversityTaxonNames Server | |
| - key: 19491596-35ae-4a91-9a98-85cf505f1bd3 # IUCN redlist | |
| - key: 672aca30-f1b5-43d3-8a2b-c1606125fa1b # Mammal Species of the World | |
| scope: | |
| name: Mammalia | |
| rank: CLASS | |
| - key: de8934f4-a136-481c-a87a-b0b202b80a31 # Dyntaxa - Svensk taxonomisk databas | |
| exclude: | |
| - name: Bursaphelenchus xylophilus # misapplied only! | |
| rank: SPECIES | |
| - key: aacd816d-662c-49d2-ad1a-97e66e2a2908 # Flora of Brazil | |
| - key: 4dd32523-a3a3-43b7-84df-4cda02f15cf7 # Dutch Species Register | |
| - key: a6c6cead-b5ce-4a4e-8cf5-1542ba708dec # Artsnavnebasen | |
| - key: bae5856f-da10-4333-90a0-5a2135361b30 # Leipzig catalogue of vascular plants | |
| scope: | |
| name: Plantae | |
| rank: KINGDOM | |
| exclude: | |
| - name: Paradiophyllochloa cordovensis # https://github.com/gbif/portal-feedback/issues/4835 | |
| rank: SPECIES | |
| - name: Paradiophyllochloa missiona | |
| rank: SPECIES | |
| - name: Paradiophyllochloa ovulifera | |
| rank: SPECIES | |
| - name: Paradiophyllochloa penicillata | |
| rank: SPECIES | |
| - key: 3f8a1297-3259-4700-91fc-acc4170b27ce # Database of Vascular Plants of Canada (VASCAN) | |
| scope: | |
| name: Plantae | |
| rank: KINGDOM | |
| - key: 1ffe055f-adda-461e-823a-d98e53d1e8de # Annotated checklist of endemic species from the Western Balkans | |
| - key: 4b3e4a71-704a-485c-917c-20a89944ea37 # Danish national list | |
| exclude: | |
| - name: Fungi | |
| rank: KINGDOM | |
| - key: dbaa27eb-29e7-4cbb-8eab-3f689cfce116 # UK Species Inventory | |
| - key: d9a4eedb-e985-4456-ad46-3df8472e00e8 # Plant List with literature | |
| scope: | |
| name: Plantae | |
| rank: KINGDOM | |
| - key: 9ca92552-f23a-41a8-a140-01abaa31c931 # ITIS | |
| - key: 0e61f8fe-7d25-4f81-ada7-d970bbb2c6d6 # TAXREF | |
| - key: 66dd0960-2d7d-46ee-a491-87b9adcfe7b1 # GRIN Taxonomy | |
| scope: | |
| name: Plantae | |
| rank: KINGDOM | |
| - key: 1ec61203-14fa-4fbd-8ee5-a4a80257b45a # The National Checklist of Taiwan | |
| - key: e1c9e885-9d8c-45b5-9f7d-b710ac2b303b # Endemic species in Taiwan | |
| - key: 1ffe055f-adda-461e-823a-d98e53d1e8de # Annotated checklist of endemic species from the Western Balkans | |
| - key: 90d9e8a6-0ce1-472d-b682-3451095dbc5a # Fauna Europaea | |
| - key: c301eb23-63d4-48dd-addf-b2a9c9c260fd # Asiloid Flies. New taxa of Diptera Apioceridae, Asilidae, and Mydidae | |
| - key: 8d431c96-9e2f-4249-8b0a-d875e3273908 # Catalogue of the type specimens of Cosmopterigidae | |
| - key: b267ac9b-6516-458e-bea7-7643842187f7 # Catalogue of the type specimens of Polycestinae | |
| - key: 5c7bf05c-2890-48e8-9b65-a6060cb75d6d # Catalogue of the type specimens of Bufonidae and Megophryidae | |
| - key: e2116003-7282-4547-bf24-dabe0a0d76ee # Systema Dipterorum | |
| scope: | |
| name: Diptera | |
| rank: ORDER | |
| - key: 046bbc50-cae2-47ff-aa43-729fbf53f7c5 # International Plant Names Index | |
| scope: | |
| name: Plantae | |
| rank: KINGDOM | |
| - key: 80b4b440-eaca-4860-aadf-d0dfdd3e856e # Official Lists and Indexes of Names in Zoology | |
| scope: | |
| name: Animalia | |
| rank: KINGDOM | |
| - key: c8227bb4-4143-443f-8cb2-51f9576aff14 # ZooBank | |
| rank: GENUS | |
| scope: | |
| name: Animalia | |
| rank: KINGDOM | |
| - key: 61a5f178-b5fb-4484-b6d8-9b129739e59d # UNITE - Unified system for the DNA based fungal species linked to the classification | |
| OTU: true | |
| exclude: | |
| - name: Alveolata | |
| rank: KINGDOM | |
| - name: Amoebozoa | |
| rank: KINGDOM | |
| - name: Apusozoa | |
| rank: KINGDOM | |
| - name: Choanoflagellozoa | |
| rank: KINGDOM | |
| - name: Cryptista | |
| rank: KINGDOM | |
| - name: Euglenozoa | |
| rank: KINGDOM | |
| - name: Eukaryota kgd Incertae sedis | |
| rank: KINGDOM | |
| - name: Filasteriae | |
| rank: KINGDOM | |
| - name: Fornicata | |
| rank: KINGDOM | |
| - name: Glaucocystoplantae | |
| rank: KINGDOM | |
| - name: Haptista | |
| rank: KINGDOM | |
| - name: Heterolobosa | |
| rank: KINGDOM | |
| - name: Ichthyosporia | |
| rank: KINGDOM | |
| - name: Metazoa | |
| rank: KINGDOM | |
| - name: Nucleariae | |
| rank: KINGDOM | |
| - name: Parabasalia | |
| rank: KINGDOM | |
| - name: Picozoa | |
| rank: KINGDOM | |
| - name: Planomonada | |
| rank: KINGDOM | |
| - name: Protista | |
| rank: KINGDOM | |
| - key: 4cec8fef-f129-4966-89b7-4f8439aba058 # iBOL/BOLD | |
| OTU: true | |
| exclude: | |
| - name: Curculionidae | |
| rank: GENUS | |
| - key: f65a5234-a8f5-4c03-baa6-029fb56ac55b # Cortinariaceae from Index Fungorum API | |
| scope: | |
| name: Fungi | |
| rank: KINGDOM | |
| - key: bf3db7c9-5e5d-4fd0-bd5b-94539eaf9598 # Index Fungorum | |
| scope: | |
| name: Fungi | |
| rank: KINGDOM | |
| - key: 0ed9e0d4-af21-4f49-9f49-11e75d690b93 # Backbone Nomenclator | |
| - key: 0938172b-2086-439c-a1dd-c21cb0109ed5 # IRMNG | |
| - key: 5c0b1470-8884-4914-ae76-70a7c81d6d08 # Catálogo de Plantas y Líquenes de Colombia | |
| - key: 6c9c4b08-4cec-4160-a708-7f16060d7db0 # Lista de referencia de especies de aves de Colombia - 2020 | |
| scope: | |
| name: Aves | |
| rank: CLASS | |
| - key: 973da290-27d9-48cc-9e29-3186dafdb506 # Lista de especies de vertebrados registrados en jurisdicción del Departamento del Huila | |
| - key: 00e791be-36ae-40ee-8165-0b2cb0b8c84f # Famous species | |
| rank: GENUS | |
| - key: 7ce8aef0-9e92-11dc-8738-b8a03c50a862 # Plazi ORG | |
| rank: GENUS | |
| synonyms: false | |
| - key: fcab086c-35a9-4080-90f9-7a644afbe81c # Russian Earthworms, pt1 | |
| scope: | |
| name: Clitellata | |
| rank: CLASS | |
| - key: 4aace3c6-f108-439a-82af-b4615404a236 # Russian Earthworms, pt2 | |
| scope: | |
| name: Clitellata | |
| rank: CLASS | |
| - key: c33ce2f2-c3cc-43a5-a380-fe4526d63650 # Paleobiology Database | |
| - key: 6e4c3b6f-0126-4c5f-bd63-fe6ffd3b29fa # Family Classification Patch | |
| # excluded datasets from publishers like Plazi | |
| datasetExclusions: | |
| - c35887df-f50e-4c13-8b29-5f23d0e1df75 # Hyla Quoyi-Hyla Prasina Case | |
| # epithets keyed by family | |
| basionymExclusions: | |
| Chrysomelidae: | |
| - nigripennis # https://github.com/gbif/checklistbank/issues/179 | |
| Orchidaceae: | |
| - extinctoria # https://github.com/gbif/portal-feedback/issues/4170 | |
| Cicadellidae: | |
| - guttulata # https://github.com/CatalogueOfLife/testing/issues/135 | |
| Nymphalidae: | |
| - mylitta # https://github.com/gbif/portal-feedback/issues/4332 | |
| # Wrong homonyms above species rank that should be excluded from the backbone, regardless of which source they came from. | |
| # List of canonical names with its direct parent to identifiy the version to be removed. | |
| # All other names with the same canonical name, but different parent, are kept. | |
| homonymExclusions: | |
| # order | |
| Diplomonadida: | |
| - Eopharyngea | |
| Piroplasmida: | |
| - Miozoa | |
| Trichomonadida: | |
| - Trichomonadea | |
| # families | |
| Glossoscolecidae: | |
| - Crassiclitellata | |
| # genera | |
| Abisara: | |
| - Riodinidae | |
| Actinosphaera: | |
| - Watznaueriaceae | |
| Aethia: | |
| - Lonchocephalidae | |
| Alesa: | |
| - Riodinidae | |
| Anama: | |
| - Cerambycidae | |
| Ancyluris: | |
| - Riodinidae | |
| Aniculus: | |
| - Paguridea | |
| Anteros: | |
| - Riodinidae | |
| Apodemia: | |
| - Riodinidae | |
| Argyrogrammana: | |
| - Riodinidae | |
| Aricoris: | |
| - Riodinidae | |
| Arpadites: | |
| - Trachyceratidae | |
| Audre: | |
| - Riodinidae | |
| Axiagasta: | |
| - Geometridae | |
| Babesia: | |
| - Aegyptianella | |
| Baeotis: | |
| - Riodinidae | |
| Barbicornis: | |
| - Riodinidae | |
| Barroisiceras: | |
| - Muniericeratidae | |
| Bartramia: | |
| - Bryopsida | |
| Cadosinopsis: | |
| - Thoracosphaeraceae | |
| Calephelis: | |
| - Riodinidae | |
| Calydna: | |
| - Riodinidae | |
| Caria: | |
| - Riodinidae | |
| Carterus: | |
| - Curculionidae | |
| Cerceris: | |
| - Masaridae | |
| Chaetophora: | |
| - Chaetophoraceae | |
| Chalodeta: | |
| - Riodinidae | |
| Chamaelimnas: | |
| - Riodinidae | |
| Charis: | |
| - Riodinidae | |
| Chorinea: | |
| - Riodinidae | |
| Cicada: | |
| - Animalia | |
| - Cicadellidae | |
| Clionites: | |
| - Sandlingitidae | |
| Cnemidophorus: | |
| - Curculionidae | |
| Coccinella: | |
| - Hydrophilidae | |
| - Mollusca | |
| Colaciticus: | |
| - Riodinidae | |
| Cremna: | |
| - Riodinidae | |
| Curculionites: | |
| - Coleoptera | |
| Cyrtia: | |
| - Syringothyrididae | |
| Dardanus: | |
| - Paguridae | |
| Dicallaneura: | |
| - Riodinidae | |
| Discias: | |
| - Bresiliidae | |
| Dodona: | |
| - Riodinidae | |
| Ducellieria: | |
| - Ducellieriaceae | |
| Dysmathia: | |
| - Riodinidae | |
| Ematurgina: | |
| - Riodinidae | |
| Emesis: | |
| - Riodinidae | |
| Endemosarca: | |
| - Endemosarcaceae | |
| Esthemopsis: | |
| - Riodinidae | |
| Eurybia: | |
| - Riodinidae | |
| Euselasia: | |
| - Riodinidae | |
| Heliodiscus: | |
| - Bacillariophyceae | |
| Hermathena: | |
| - Riodinidae | |
| Heteronyx: | |
| - Curculionidae | |
| Hiatella: | |
| - Lyonsiidae | |
| Hirundo: | |
| - Annelida | |
| Hyphilaria: | |
| - Riodinidae | |
| Ichneumon: | |
| - Eulophidae | |
| Imelda: | |
| - Riodinidae | |
| Ithomeis: | |
| - Riodinidae | |
| Ithomiola: | |
| - Riodinidae | |
| Ixodes: | |
| - Aves | |
| Jerdonia: | |
| - Aves # https://github.com/gbif/portal-feedback/issues/2724 | |
| Komiella: | |
| - Rugosochonetidae | |
| Lasaia: | |
| - Riodinidae | |
| Lemonias: | |
| - Riodinidae | |
| Lepricornis: | |
| - Riodinidae | |
| Leucochimona: | |
| - Riodinidae | |
| Ligniera: | |
| - Plasmodiophoraceae | |
| Lyropteryx: | |
| - Riodinidae | |
| Lytoceras: | |
| - Tetragonitidae | |
| Melanis: | |
| - Riodinidae | |
| Membranosorus: | |
| - Plasmodiophoraceae | |
| Menander: | |
| - Riodinidae | |
| Mesene: | |
| - Riodinidae | |
| Mesenopsis: | |
| - Riodinidae | |
| Mesosemia: | |
| - Riodinidae | |
| Metacharis: | |
| - Riodinidae | |
| Milvus: | |
| - Falconidae | |
| Monethe: | |
| - Riodinidae | |
| Musca: | |
| - Tachinidae | |
| Napaea: | |
| - Riodinidae | |
| Necyria: | |
| - Riodinidae | |
| Nymphidium: | |
| - Riodinidae | |
| Octomyxa: | |
| - Plasmodiophoraceae | |
| Octotoma: | |
| - Dryophthoridae | |
| Oligomerus: | |
| - Ptinidae | |
| Omma: | |
| - Cupedidae | |
| Pachythone: | |
| - Riodinidae | |
| Panara: | |
| - Riodinidae | |
| Pandemos: | |
| - Riodinidae | |
| Paracrangon: | |
| - Hippolytidae | |
| Parahoplites: | |
| - Deshayesitidae | |
| Paralaxita: | |
| - Riodinidae | |
| Pelecanus: | |
| - Dinosauria | |
| Phaenochitonia: | |
| - Riodinidae | |
| Planaria: | |
| - Nemertea | |
| Plasmodiophora: | |
| - Plasmodiophoraceae | |
| Platyrhynchus: | |
| - Attelabidae | |
| Pleuridium: | |
| - Archidiaceae | |
| Polycaena: | |
| - Riodinidae | |
| Polymyxa: | |
| - Plasmodiophoraceae | |
| Praetaxila: | |
| - Riodinidae | |
| Productus: | |
| - Aulostegidae | |
| Productus: | |
| - Linoproductidae | |
| Productus: | |
| - Productellidae | |
| Psorergates: | |
| - Cheyletidae | |
| Pterographium: | |
| - Riodinidae | |
| Raphidiophrys: | |
| - Raphidiophryidae | |
| Rodinia: | |
| - Riodinidae | |
| Roeberella: | |
| - Riodinidae | |
| Semomesia: | |
| - Riodinidae | |
| Setabis: | |
| - Riodinidae | |
| Siseme: | |
| - Riodinidae | |
| Sorodiscus: | |
| - Plasmodiophoraceae | |
| Sphex: | |
| - Pompilidae | |
| Sphex: | |
| - Vespidae | |
| Spirifer: | |
| - Paeckelmanellidae | |
| Spiriferina: | |
| - Paraspiriferinidae | |
| Spiriferina: | |
| - Spiriferellidae | |
| Sporomyxa: | |
| - Plasmodiophoraceae | |
| Stichelia: | |
| - Riodinidae | |
| Symmachia: | |
| - Riodinidae | |
| Syrmatia: | |
| - Riodinidae | |
| Taxila: | |
| - Riodinidae | |
| Teratophthalma: | |
| - Riodinidae | |
| Tetramyxa: | |
| - Plasmodiophoraceae | |
| Tettigonia: | |
| - Cicadidae | |
| Thalassomyces: | |
| - Ellobiopsidae | |
| Themone: | |
| - Riodinidae | |
| Theope: | |
| - Riodinidae | |
| Vrilletta: | |
| - Curculionidae | |
| Woronina: | |
| - Plasmodiophoraceae | |
| Xenandra: | |
| - Riodinidae | |
| Zelotaea: | |
| - Riodinidae |
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment