Skip to content

Instantly share code, notes, and snippets.

@mdoering
mdoering / aster-xrel.yaml
Created March 15, 2023 13:40
Aster configs
alias: "XAST{attempt}"
title: Extended Asterales
version: "{attempt}"
description: |
The World Plants and WCVP Asterales order extended by various merge sectors to increase coverage
and test system behavior.
# GBIF publisher keys to follow and create sectors for if missing
sourcePublisher:
# - bb922300-7ddb-11de-a300-90ac77aa923f # Plazi
@mdoering
mdoering / metadata.yml
Created November 10, 2022 09:15
WoRMS Foraminifera Version / Issued ver. (11/2022) / 2022-11-01
---
title: 'World Foraminifera Database'
alias: 'WoRMS Foraminifera'
description: "This World Database of all species of Foraminifera ever described, is part of the World Register of Marine Species (WoRMS), a global initiative to provide a register of all marine organisms.\r\nForaminifera (‘hole bearers’) or forams for short, are a large phylum of amoeboid protozoans (single celled) with reticulating pseudopods, fine strands of cytoplasm that branch and merge to form a dynamic net. They usually produce a test (or shell) which can have one or more chambers, and are made of calcium carbonate (CaCO3) or mineral grains or other particles glued together. The tests are usually less than 0.5 mm in size, but the largest can be up to 20 cm across. Foraminifera are among the most abundant and scientifically important groups of marine organisms. The tests of recently dead planktic foraminifera are so abundant that they form a thick blanket over one third of the surface of the Earth (as Globigerina ooze on the ocean floo
@mdoering
mdoering / col-metadata.json
Created August 5, 2021 16:01
COL Release Metadata
{
"created":"2021-07-29T09:24:54.644871",
"createdBy":101,
"modified":"2021-08-03T07:01:02.918149",
"modifiedBy":101,
"key":2328,
"sourceKey":3,
"type":"taxonomic",
"origin":"released",
"attempt":50,
@mdoering
mdoering / license.txt
Created July 29, 2021 13:00
col licenses july 2021
col=> select key,alias,license from dataset_source where dataset_key =2328 order by key;
key | alias | license
------+--------------------------------------+---------
1005 | CCW | CC0
1008 | ReptileDB | CC_BY
1010 | FishBase | CC_BY
1011 | FLOW | CC_BY
1014 | ICTV MSL | CC_BY
1015 | ILDIS | CC_BY
1018 | LepIndex | CC_BY
@mdoering
mdoering / contributors.txt
Created July 27, 2021 22:24
contributor names
Aalbu R.
Adlard R.
Adriaenssens E.
Aedo C.
Aescht E.
Akkari N.
Alonso-Zarazaga M. A.
Alvarez B.
Alvarez F.
Anderson G.
package life.catalogue.db.tree;
import life.catalogue.common.io.Resources;
import life.catalogue.dao.FileMetricsDatasetDao;
import java.io.File;
import org.apache.commons.lang3.time.StopWatch;
import org.junit.Test;
@mdoering
mdoering / chilopoda.txt
Last active June 1, 2021 09:11
Chilopoda diff
Chilopoda Latreille, 1817 [class]
Notostigmophora Verhoeff, 1901 [subclass]
Scutigeromorpha Pocock, 1895 [order]
Crussolidae Shear, 1998 [family]
Crussolum Shear, 1998 [genus]
Crussolum crusseratum Shear, 1998 [species]
Pselliodidae Chamberlin, 1955 [family]
Gonethella [genus]
Gonethella nesiotes [species]
Gonethina [genus]
@mdoering
mdoering / head.html
Created April 14, 2021 13:43
Portal header test
<html>
<head>
<meta property="og:title" content="Plantae" />
<meta property="og:url" content="https://www.catalogueoflife.org/data/taxon/29a8c4b8-c541-413d-9604-5715450d14f5" />
<meta property="og:description" content="Plantae in the Catalogue of Life" />
<meta name="twitter:card" content="summary"/>
<meta name="twitter:site" content="@catalogueoflife"/>
<meta name="twitter:title" content="Plantae" />
<meta name="twitter:description" content="Plantae in the Catalogue of Life" />
@mdoering
mdoering / sources.md
Created April 13, 2021 15:05
March sources
1005: Oosterbroek P. (2021). CCW: Catalogue of Craneflies of the World (version Jul 2013). In: Catalogue of Life, et al. (2021). Species 2000 & ITIS Catalogue of Life, 2021-04-05. Digital resource at www.catalogueoflife.org. Species 2000: Naturalis, Leiden, the Netherlands. ISSN 2405-8858.
1006: Vignes-Lebbe R., Gallut C. (2021). CIPA: Computer Aided Identification of Phlebotomine sandflies of Americas (version 3, Mar 2011). In: Catalogue of Life, et al. (2021). Species 2000 & ITIS Catalogue of Life, 2021-04-05. Digital resource at www.catalogueoflife.org. Species 2000: Naturalis, Leiden, the Netherlands. ISSN 2405-8858.
1008: Uetz P., Hošek J. (2021). ReptileDB: The Reptile Database (version Dec 2015). In: Catalogue of Life, et al. (2021). Species 2000 & ITIS Catalogue of Life, 2021-04-05. Digital resource at www.catalogueoflife.org. Species 2000: Naturalis, Leiden, the Netherlands. ISSN 2405-8858.
1009: Brinton E., Ohman M.D., Townsend A.W., Knight M.D., Bridgeman A.L. (2021). ETI WBD (Euphausiacea): Wo
@mdoering
mdoering / worms-eml.xml
Created March 16, 2021 08:57
WoRMS EML
<eml:eml xmlns:eml="eml://ecoinformatics.org/eml-2.1.1"
xmlns:md="eml://ecoinformatics.org/methods-2.1.1"
xmlns:proj="eml://ecoinformatics.org/project-2.1.1"
xmlns:d="eml://ecoinformatics.org/dataset-2.1.1"
xmlns:res="eml://ecoinformatics.org/resource-2.1.1"
xmlns:dc="http://purl.org/dc/terms/"
xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
xsi:schemaLocation="eml://ecoinformatics.org/eml-2.1.1 http://rs.gbif.org/schema/eml-gbif-profile/1.0.1/eml.xsd"
packageId="WoRMS_export_2021-03-01" system="http://gbif.org" scope="system" xml:lang="eng">
<dataset id="http://dx.doi.org/10.14284/170">