SMRT Link System and Test Dependencies

Readme.md

SMRT Link Dependencies

DOT Legend

Shape (and Color)	Description
RECT DOTTED	Third party dependency
OVAL GREEN	Build Output
RECT	BitBucket Repo
DIAMOND PURPLE	SMRT Link Service Subcomponent (to the SL Services Core Component)
HEXAGON AQUA	SMRT Link Core Subcomponent
DOUBLE HEX BLUE	SMRT Link System

In this model, the SL_services_slag is approximately the current "pbbundler" + "smrtslag" components.

The installer has dependencies on the tools within the current "pbbundler". This is not cleanly captured in here. Perhaps, SL_subservices_slag -> SL_installer captures the dependency? This is mixing up the build time vs run time dependencies.

The smrtflow component emits two overlapping sets of tools. One at the "SLAG" layer, and one at the "tools" layer. In the current system, generates two versions of some commandline tools (e.g., pbservice) in the SMRT Link System master build.

Notable Dependency Items

• The SHA from pbsmrtpipe must be the same in both the SMRT Link Tools and SMRT Link Services Core components via Resolve Pipeline Template JSON Files
• The SHA from smrtflow must be the same in the SL Tools and SL Services

makefile

convert:
	dot -Tsvg -osmrtlink.svg smrtlink.dot
	dot -Tpng -Gsize=9,15\! -Gdpi=300 -osmrtlink.png smrtlink.dot

smrtlink.dot

digraph G {
  size ="8,10";

  /* Repos*/
  pbsmrtpipe [shape=box]
  pbreports [shape=box]
  pbcommand [shape=box]
  pbcore [shape=box]
  pbcoretools [shape=box]
  smrtflow [shape=box]
  smrtlinkdata [shape=box]
  smrtview [shape=box]
  ui [shape=box]
  smrtlinkbuild [shape=box]
  chemistrybundle [shape=box]

  /* Third Party Components */
  postgres [shape=rect, style=dotted]
  wso2 [shape=rect, style=dotted]
  tomcat [shape=rect, style=dotted]

  /* Build Outputs */
  PipelineTemplates [shape=oval, color=green,style=filled]
  PbscalaTools [shape=oval, color=green, style=filled]

  /* SL Service Subcomponents */
  SL_subservices_smrtview [shape=diamond,color=orchid, style=filled]
  SL_subservices_slag [shape=diamond, color=orchid, style=filled]

  /* SL Components */
  SL_tools [shape=octagon, color=cyan, style=filled]
  SL_services [shape=octagon, color=cyan, style=filled]
  SL_installer [shape=octagon, color=cyan, style=filled]

  /* Smrt Link System */
  SMRT_Link [shape=doubleoctagon, color=blue]


  /* repo dependencies */

  pbcore -> pbsmrtpipe
  pbcommand -> pbsmrtpipe
  pbcommand -> pbcoretools
  pbcore -> pbcoretools

  /* Installer */
  smrtlinkbuild -> SL_installer
  /* This is not completely clear */
  SL_tools -> SL_installer [style=dotted]
  SL_services -> SL_installer [style=dotted]

  /* Build Output dependencies */
  pbsmrtpipe -> PipelineTemplates
  smrtflow -> PbscalaTools

  PbscalaTools ->  SL_tools
  pbreports -> SL_tools
  pbsmrtpipe -> SL_tools
  pbcoretools -> SL_tools

  ui -> SL_subservices_slag
  tomcat -> SL_subservices_slag
  postgres -> SL_subservices_slag
  wso2 -> SL_subservices_slag
  smrtlinkdata -> SL_subservices_slag
  smrtflow -> SL_subservices_slag
  smrtview -> SL_subservices_smrtview
  PipelineTemplates -> SL_subservices_slag
  chemistrybundle -> SL_subservices_slag

  SL_subservices_smrtview -> SL_services
  SL_subservices_slag -> SL_services

  SL_installer -> SMRT_Link
  SL_tools -> SMRT_Link
  SL_services -> SMRT_Link
}

smrtlink.png

smrtlink.svg