motif_summary.xml

<?xml version="1.0" encoding="UTF-8"?>
<report>
    <title>Motifs</title>
    <table>
        <thead>
            <tr>
                <th>Mof</th>
                <th>Modified Position</th>
                <th>Modification Type</th>
                <th>% Motifs Detected</th>
                <th># of Motifs Detected</th>
                <th># of Motifs in Genome</th>
                <th>Mean Modification QV</th>
                <th>Mean Motif Coverage</th>
                <th>Partner Motif</th>
            </tr>
        </thead>
        <tbody>
            <tr>
                <td>G<b>A</b>TC</td>
                <td>2</td>
                <td>m6A</td>
                <td>100.00</td>
                <td>322</td>
                <td>322</td>
                <td>147.4</td>
                <td>100.4</td>
                <td>GATC</td>
            </tr>
            <tr>
                <td>HNNNN<b>C</b>CNGSCNNASC</td>
                <td>6</td>
                <td>unknown</td>
                <td>100.00</td>
                <td>5</td>
                <td>5</td>
                <td>40.2</td>
                <td>85.6</td>
                <td/>
            </tr>
            <tr>
                <td>WNN<b>C</b>NNCANGGMNA</td>
                <td>4</td>
                <td>unknown</td>
                <td>100.00</td>
                <td>5</td>
                <td>5</td>
                <td>36.8</td>
                <td>84.8</td>
                <td/>
            </tr>
            <tr>
                <td><b>C</b>CAGGTANNNNNNNNNV</td>
                <td>1</td>
                <td>unknown</td>
                <td>90.91</td>
                <td>10</td>
                <td>11</td>
                <td>51.1</td>
                <td>102.7</td>
                <td/>
            </tr>
            <tr>
                <td>DMANNC<b>C</b>WGGA</td>
                <td>7</td>
                <td>m4C</td>
                <td>83.33</td>
                <td>5</td>
                <td>6</td>
                <td>46.2</td>
                <td>107.0</td>
                <td/>
            </tr>
            <tr>
                <td>VNNNVNNBNNNN<b>C</b>CTGGB</td>
                <td>13</td>
                <td>unknown</td>
                <td>65.00</td>
                <td>26</td>
                <td>40</td>
                <td>51.2</td>
                <td>104.7</td>
                <td/>
            </tr>
            <tr>
                <td>WVRNNNNGNGNBC<b>C</b>W</td>
                <td>14</td>
                <td>unknown</td>
                <td>50.00</td>
                <td>5</td>
                <td>10</td>
                <td>38.0</td>
                <td>101.2</td>
                <td/>
            </tr>
            <tr>
                <td>MNNNNNNYGNNRRA<b>G</b>TW</td>
                <td>15</td>
                <td>unknown</td>
                <td>50.00</td>
                <td>5</td>
                <td>10</td>
                <td>37.2</td>
                <td>105.6</td>
                <td/>
            </tr>
            <tr>
                <td>WNRNNV<b>C</b>NTTANDNNNNA</td>
                <td>7</td>
                <td>unknown</td>
                <td>41.67</td>
                <td>5</td>
                <td>12</td>
                <td>35.0</td>
                <td>101.6</td>
                <td/>
            </tr>
            <tr>
                <td>
                    <i>Not Clustered</i>
                </td>
                <td>0</td>
                <td/>
                <td>0.23</td>
                <td>112</td>
                <td>49579</td>
                <td>40.1</td>
                <td>96.5</td>
                <td/>
            </tr>
            <tr>
                <!-- Those two remaining numbers are transformed somewhere magically in the code will make portal fail to render them-->
                <td>
                    <i>*Motif and base modification type identification is dependent on sequence
coverage, set threshold levels, degree of DNA methylation, and other factors.
Results should therefore be interpreted within the context of considering these
factors.</i>
                </td>
                <td/>
                <td/>
                <td/>
                <td>112</td>
                <td>49579</td>
                <td/>
                <td/>
                <td/>
            </tr>
        </tbody>
    </table>
    <graphGroup>
        <title>Modification QV Histogram By Motif</title>
        <graph>
            <title>Modification QV Histogram</title>
            <image>motifHistogram.png</image>
        </graph>
    </graphGroup>
</report>