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| kmer size= 11 | |
| seq count= 12933823 dropped seqs= 315235 | |
| base counts= {'A': 205503171, 'C': 192321024, 'T': 202910059, 'G': 194236790} | |
| state counts= {'Ig_u': 8251, 'Ig_t': 227463, 'Ir_t': 1919898, 'Ir_u': 92814, 'M_u': 12518640, 'M_t': 780203978} | |
| trans counts= {'Ir_t-Ir_t': 1085201, 'Ir_t-Ir_u': 4, 'M_u-Ir_t': 468, 'Ir_t-M_u': 3, 'M_t-Ig_t': 178959, 'Ig_t-M_u': 1, 'Ig_t-Ig_t': 48504, 'M_u-M_u': 63, 'M_u-M_t': 12518088, 'Ig_u-M_t': 8251, 'M_t-M_t': 766669253, 'M_t-Ir_t': 834188, 'Ig_t-M_t': 168373, 'Ir_t-M_t': 747240, 'M_t-Ir_u': 1, 'Ir_u-M_t': 92773, 'Ir_u-Ir_t': 41, 'M_t-M_u': 1045} | |
| Ig_t-Ig_t 0.2132391 | |
| Ig_t-M_t 0.7402215 | |
| Ig_t-M_u 0.0000044 | |
| Ig_u-M_t 1.0000000 | |
| Ir_t-Ir_t 0.5652389 | |
| Ir_t-Ir_u 0.0000021 | |
| Ir_t-M_t 0.3892082 | |
| Ir_t-M_u 0.0000016 | |
| Ir_u-Ir_t 0.0004417 | |
| Ir_u-M_t 0.9995583 | |
| M_t-Ig_t 0.0002294 | |
| M_t-Ir_t 0.0010692 | |
| M_t-Ir_u 0.0000000 | |
| M_t-M_t 0.9826523 | |
| M_t-M_u 0.0000013 | |
| M_u-Ir_t 0.0000374 | |
| M_u-M_t 0.9999559 | |
| M_u-M_u 0.0000050 |
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| kmer size= 12 | |
| seq count= 12933823 dropped seqs= 315235 | |
| base counts= {'A': 202313923, 'C': 189196843, 'T': 199563310, 'G': 191278380} | |
| state counts= {'Ig_u': 8312, 'Ig_t': 216441, 'Ir_t': 1827608, 'Ir_u': 84189, 'M_u': 13229059, 'M_t': 766986847} | |
| trans counts= {'Ig_t-M_t': 160190, 'M_u-Ig_u': 38, 'M_u-Ig_t': 507, 'Ir_t-M_t': 718450, 'Ir_t-M_u': 1257, 'Ig_t-M_u': 238, 'Ir_u-M_t': 82330, 'Ir_u-M_u': 241, 'Ir_t-Ir_t': 1030305, 'Ir_t-Ir_u': 2765, 'Ig_t-Ig_t': 46112, 'Ig_t-Ig_u': 68, 'Ig_u-M_u': 38, 'Ig_u-M_t': 8162, 'Ir_u-Ir_u': 309, 'Ir_u-Ir_t': 1305, 'M_u-M_u': 127126, 'Ig_u-Ig_t': 97, 'M_t-Ir_u': 1527, 'M_t-Ir_t': 794574, 'Ig_u-Ig_u': 11, 'M_u-Ir_t': 1424, 'M_u-Ir_u': 244, 'M_u-M_t': 13086075, 'M_t-Ig_t': 169725, 'M_t-Ig_u': 320, 'M_t-M_t': 752931640, 'M_t-M_u': 568790} | |
| Ig_t-Ig_t 0.2130465 | |
| Ig_t-Ig_u 0.0003142 | |
| Ig_t-M_t 0.7401093 | |
| Ig_t-M_u 0.0010996 | |
| Ig_u-Ig_t 0.0116699 | |
| Ig_u-Ig_u 0.0013234 | |
| Ig_u-M_t 0.9819538 | |
| Ig_u-M_u 0.0045717 | |
| Ir_t-Ir_t 0.5637451 | |
| Ir_t-Ir_u 0.0015129 | |
| Ir_t-M_t 0.3931095 | |
| Ir_t-M_u 0.0006878 | |
| Ir_u-Ir_t 0.0155008 | |
| Ir_u-Ir_u 0.0036703 | |
| Ir_u-M_t 0.9779187 | |
| Ir_u-M_u 0.0028626 | |
| M_t-Ig_t 0.0002213 | |
| M_t-Ig_u 0.0000004 | |
| M_t-Ir_t 0.0010360 | |
| M_t-Ir_u 0.0000020 | |
| M_t-M_t 0.9816748 | |
| M_t-M_u 0.0007416 | |
| M_u-Ig_t 0.0000383 | |
| M_u-Ig_u 0.0000029 | |
| M_u-Ir_t 0.0001076 | |
| M_u-Ir_u 0.0000184 | |
| M_u-M_t 0.9891917 | |
| M_u-M_u 0.0096096 |
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| kmer size= 13 | |
| seq count= 12933823 dropped seqs= 315235 | |
| base counts= {'A': 199185798, 'C': 186012405, 'T': 196233401, 'G': 188302264} | |
| state counts= {'Ig_u': 15562, 'Ig_t': 198701, 'Ir_t': 1654505, 'Ir_u': 169264, 'M_u': 26727498, 'M_t': 740968338} | |
| trans counts= {'Ig_t-M_t': 144823, 'M_u-Ig_u': 2641, 'M_u-Ig_t': 8444, 'Ig_t-M_u': 2957, 'Ir_t-M_u': 17967, 'Ir_t-M_t': 622226, 'Ir_u-M_t': 115454, 'Ir_u-M_u': 12205, 'Ir_t-Ir_t': 909602, 'Ir_t-Ir_u': 42299, 'Ig_t-Ig_t': 41344, 'Ig_t-Ig_u': 960, 'Ig_u-M_u': 1990, 'Ig_u-M_t': 11471, 'Ir_u-Ir_u': 21086, 'Ir_u-Ir_t': 20406, 'M_u-M_u': 6075252, 'M_u-M_t': 20336827, 'M_t-Ir_u': 26264, 'M_t-Ir_t': 709816, 'Ig_u-Ig_u': 604, 'M_u-Ir_t': 14681, 'M_u-Ir_u': 13464, 'Ig_u-Ig_t': 1440, 'M_t-Ig_t': 147473, 'M_t-Ig_u': 4135, 'M_t-M_t': 719737537, 'M_t-M_u': 8071912} | |
| Ig_t-Ig_t 0.2080714 | |
| Ig_t-Ig_u 0.0048314 | |
| Ig_t-M_t 0.7288489 | |
| Ig_t-M_u 0.0148817 | |
| Ig_u-Ig_t 0.0925331 | |
| Ig_u-Ig_u 0.0388125 | |
| Ig_u-M_t 0.7371161 | |
| Ig_u-M_u 0.1278756 | |
| Ir_t-Ir_t 0.5497729 | |
| Ir_t-Ir_u 0.0255660 | |
| Ir_t-M_t 0.3760799 | |
| Ir_t-M_u 0.0108594 | |
| Ir_u-Ir_t 0.1205572 | |
| Ir_u-Ir_u 0.1245746 | |
| Ir_u-M_t 0.6820942 | |
| Ir_u-M_u 0.0721063 | |
| M_t-Ig_t 0.0001990 | |
| M_t-Ig_u 0.0000056 | |
| M_t-Ir_t 0.0009580 | |
| M_t-Ir_u 0.0000354 | |
| M_t-M_t 0.9713472 | |
| M_t-M_u 0.0108937 | |
| M_u-Ig_t 0.0003159 | |
| M_u-Ig_u 0.0000988 | |
| M_u-Ir_t 0.0005493 | |
| M_u-Ir_u 0.0005038 | |
| M_u-M_t 0.7608953 | |
| M_u-M_u 0.2273034 |
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| kmer size= 14 | |
| seq count= 12933823 dropped seqs= 315235 | |
| base counts= {'A': 196008982, 'C': 182882986, 'T': 192951983, 'G': 185271329} | |
| state counts= {'Ig_u': 35938, 'Ig_t': 169235, 'Ir_t': 1312457, 'Ir_u': 437086, 'M_u': 63734755, 'M_t': 691425809} | |
| trans counts= {'Ig_t-M_t': 119542, 'M_u-Ig_u': 15230, 'M_u-Ig_t': 23175, 'Ig_t-M_u': 6308, 'Ir_t-M_u': 41197, 'Ir_t-M_t': 437925, 'Ir_u-M_t': 189727, 'Ir_u-M_u': 69273, 'Ir_t-Ir_t': 687526, 'Ir_t-Ir_u': 95461, 'Ig_t-Ig_t': 33549, 'Ig_t-Ig_u': 1991, 'Ig_u-M_u': 11264, 'Ig_u-M_t': 17459, 'Ir_u-Ir_u': 134381, 'Ir_u-Ir_t': 43285, 'M_u-M_u': 33881904, 'M_u-M_t': 28685803, 'M_t-Ir_u': 66509, 'M_t-Ir_t': 551804, 'Ig_u-Ig_u': 3559, 'M_u-Ir_t': 29842, 'M_u-Ir_u': 86286, 'Ig_u-Ig_t': 3476, 'M_t-Ig_t': 109035, 'M_t-Ig_u': 8352, 'M_t-M_t': 661975353, 'M_t-M_u': 17167476} | |
| Ig_t-Ig_t 0.1982391 | |
| Ig_t-Ig_u 0.0117647 | |
| Ig_t-M_t 0.7063669 | |
| Ig_t-M_u 0.0372736 | |
| Ig_u-Ig_t 0.0967221 | |
| Ig_u-Ig_u 0.0990317 | |
| Ig_u-M_t 0.4858089 | |
| Ig_u-M_u 0.3134287 | |
| Ir_t-Ir_t 0.5238465 | |
| Ir_t-Ir_u 0.0727346 | |
| Ir_t-M_t 0.3336681 | |
| Ir_t-M_u 0.0313892 | |
| Ir_u-Ir_t 0.0990309 | |
| Ir_u-Ir_u 0.3074475 | |
| Ir_u-M_t 0.4340725 | |
| Ir_u-M_u 0.1584883 | |
| M_t-Ig_t 0.0001577 | |
| M_t-Ig_u 0.0000121 | |
| M_t-Ir_t 0.0007981 | |
| M_t-Ir_u 0.0000962 | |
| M_t-M_t 0.9574062 | |
| M_t-M_u 0.0248291 | |
| M_u-Ig_t 0.0003636 | |
| M_u-Ig_u 0.0002390 | |
| M_u-Ir_t 0.0004682 | |
| M_u-Ir_u 0.0013538 | |
| M_u-M_t 0.4500810 | |
| M_u-M_u 0.5316080 |
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| kmer size= 15 | |
| seq count= 12933823 dropped seqs= 315235 | |
| base counts= {'A': 192803878, 'C': 179790372, 'T': 189612678, 'G': 182289764} | |
| state counts= {'Ig_u': 56108, 'Ig_t': 140546, 'Ir_t': 955612, 'Ir_u': 732648, 'M_u': 101854446, 'M_t': 640757332} | |
| trans counts= {'Ig_t-M_t': 98409, 'M_u-Ig_u': 32387, 'M_u-Ig_t': 32124, 'Ig_t-M_u': 6426, 'Ir_t-M_u': 45087, 'Ir_t-M_t': 279037, 'Ir_u-M_t': 234550, 'Ir_u-M_u': 153471, 'Ir_t-Ir_t': 482709, 'Ir_t-Ir_u': 108830, 'Ig_t-Ig_t': 27134, 'Ig_t-Ig_u': 1966, 'Ig_u-M_u': 24283, 'Ig_u-M_t': 19590, 'Ir_u-Ir_u': 306452, 'Ir_u-Ir_t': 37441, 'M_u-M_u': 72330408, 'M_u-M_t': 27433000, 'M_t-Ir_u': 68635, 'M_t-Ir_t': 408472, 'Ig_u-Ig_u': 7566, 'M_u-Ir_t': 26990, 'M_u-Ir_u': 204797, 'Ig_u-Ig_t': 4319, 'M_t-Ig_t': 76969, 'M_t-Ig_u': 7877, 'M_t-M_t': 612692746, 'M_t-M_u': 16726429} | |
| Ig_t-Ig_t 0.1930613 | |
| Ig_t-Ig_u 0.0139883 | |
| Ig_t-M_t 0.7001907 | |
| Ig_t-M_u 0.0457217 | |
| Ig_u-Ig_t 0.0769765 | |
| Ig_u-Ig_u 0.1348471 | |
| Ig_u-M_t 0.3491481 | |
| Ig_u-M_u 0.4327903 | |
| Ir_t-Ir_t 0.5051307 | |
| Ir_t-Ir_u 0.1138851 | |
| Ir_t-M_t 0.2919982 | |
| Ir_t-M_u 0.0471813 | |
| Ir_u-Ir_t 0.0511037 | |
| Ir_u-Ir_u 0.4182800 | |
| Ir_u-M_t 0.3201401 | |
| Ir_u-M_u 0.2094744 | |
| M_t-Ig_t 0.0001201 | |
| M_t-Ig_u 0.0000123 | |
| M_t-Ir_t 0.0006375 | |
| M_t-Ir_u 0.0001071 | |
| M_t-M_t 0.9562009 | |
| M_t-M_u 0.0261042 | |
| M_u-Ig_t 0.0003154 | |
| M_u-Ig_u 0.0003180 | |
| M_u-Ir_t 0.0002650 | |
| M_u-Ir_u 0.0020107 | |
| M_u-M_t 0.2693353 | |
| M_u-M_u 0.7101350 |
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| kmer size= 16 | |
| seq count= 12933823 dropped seqs= 315235 | |
| base counts= {'A': 189654700, 'C': 176634939, 'T': 186302033, 'G': 179286432} | |
| state counts= {'Ig_u': 69022, 'Ig_t': 119864, 'Ir_t': 682619, 'Ir_u': 955564, 'M_u': 127034144, 'M_t': 603016891} | |
| trans counts= {'Ig_t-M_t': 84716, 'M_u-Ig_u': 45360, 'M_u-Ig_t': 34990, 'Ir_t-M_t': 185605, 'Ir_t-M_u': 34078, 'Ig_t-M_u': 4842, 'Ir_u-M_t': 244310, 'Ir_u-M_u': 225922, 'Ir_t-Ir_t': 333069, 'Ir_t-Ir_u': 99083, 'Ig_t-Ig_t': 23169, 'Ig_t-Ig_u': 1401, 'Ig_u-M_u': 34728, 'Ig_u-M_t': 18861, 'Ir_u-Ir_u': 462117, 'Ir_u-Ir_t': 22259, 'M_u-M_u': 101442087, 'M_u-M_t': 22839778, 'M_t-Ir_u': 55440, 'M_t-Ir_t': 309619, 'Ig_u-Ig_u': 10733, 'M_u-Ir_t': 17672, 'M_u-Ir_u': 304384, 'Ig_u-Ig_t': 4332, 'M_t-Ig_t': 57373, 'M_t-Ig_u': 6023, 'M_t-M_t': 579643621, 'M_t-M_u': 12713944} | |
| Ig_t-Ig_t 0.1932941 | |
| Ig_t-Ig_u 0.0116882 | |
| Ig_t-M_t 0.7067677 | |
| Ig_t-M_u 0.0403958 | |
| Ig_u-Ig_t 0.0627626 | |
| Ig_u-Ig_u 0.1555011 | |
| Ig_u-M_t 0.2732607 | |
| Ig_u-M_u 0.5031439 | |
| Ir_t-Ir_t 0.4879281 | |
| Ir_t-Ir_u 0.1451512 | |
| Ir_t-M_t 0.2719013 | |
| Ir_t-M_u 0.0499224 | |
| Ir_u-Ir_t 0.0232941 | |
| Ir_u-Ir_u 0.4836065 | |
| Ir_u-M_t 0.2556710 | |
| Ir_u-M_u 0.2364279 | |
| M_t-Ig_t 0.0000951 | |
| M_t-Ig_u 0.0000100 | |
| M_t-Ir_t 0.0005134 | |
| M_t-Ir_u 0.0000919 | |
| M_t-M_t 0.9612394 | |
| M_t-M_u 0.0210839 | |
| M_u-Ig_t 0.0002754 | |
| M_u-Ig_u 0.0003571 | |
| M_u-Ir_t 0.0001391 | |
| M_u-Ir_u 0.0023961 | |
| M_u-M_t 0.1797924 | |
| M_u-M_u 0.7985419 |
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| kmer size= 17 | |
| seq count= 12933823 dropped seqs= 315235 | |
| base counts= {'A': 186461193, 'C': 173541994, 'T': 183028530, 'G': 176227799} | |
| state counts= {'Ig_u': 76288, 'Ig_t': 105915, 'Ir_t': 489750, 'Ir_u': 1109254, 'M_u': 140902062, 'M_t': 576576247} | |
| trans counts= {'Ig_t-M_t': 76224, 'M_u-Ig_u': 53762, 'M_u-Ig_t': 35322, 'Ig_t-M_u': 3131, 'Ir_t-M_u': 20020, 'Ir_t-M_t': 138832, 'Ir_u-M_t': 240378, 'Ir_u-M_u': 272751, 'Ir_t-Ir_t': 231618, 'Ir_t-Ir_u': 75922, 'Ig_t-Ig_t': 20866, 'Ig_t-Ig_u': 830, 'Ig_u-M_u': 41276, 'Ig_u-M_t': 17721, 'Ir_u-Ir_u': 582353, 'Ir_u-Ir_t': 12662, 'M_u-M_u': 118540418, 'M_u-M_t': 19190506, 'M_t-Ir_u': 49630, 'M_t-Ir_t': 234654, 'Ig_u-Ig_u': 12631, 'M_u-Ir_t': 10816, 'M_u-Ir_u': 374248, 'Ig_u-Ig_t': 4176, 'M_t-Ig_t': 45551, 'M_t-Ig_u': 4139, 'M_t-M_t': 556912586, 'M_t-M_u': 9437905} | |
| Ig_t-Ig_t 0.1970070 | |
| Ig_t-Ig_u 0.0078365 | |
| Ig_t-M_t 0.7196714 | |
| Ig_t-M_u 0.0295614 | |
| Ig_u-Ig_t 0.0547399 | |
| Ig_u-Ig_u 0.1655699 | |
| Ig_u-M_t 0.2322908 | |
| Ig_u-M_u 0.5410549 | |
| Ir_t-Ir_t 0.4729311 | |
| Ir_t-Ir_u 0.1550219 | |
| Ir_t-M_t 0.2834752 | |
| Ir_t-M_u 0.0408780 | |
| Ir_u-Ir_t 0.0114149 | |
| Ir_u-Ir_u 0.5249952 | |
| Ir_u-M_t 0.2167024 | |
| Ir_u-M_u 0.2458869 | |
| M_t-Ig_t 0.0000790 | |
| M_t-Ig_u 0.0000072 | |
| M_t-Ir_t 0.0004070 | |
| M_t-Ir_u 0.0000861 | |
| M_t-M_t 0.9658958 | |
| M_t-M_u 0.0163689 | |
| M_u-Ig_t 0.0002507 | |
| M_u-Ig_u 0.0003816 | |
| M_u-Ir_t 0.0000768 | |
| M_u-Ir_u 0.0026561 | |
| M_u-M_t 0.1361975 | |
| M_u-M_u 0.8412965 |
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| kmer size= 18 | |
| seq count= 12933823 dropped seqs= 315235 | |
| base counts= {'A': 183233044, 'C': 170466102, 'T': 179707322, 'G': 173234460} | |
| state counts= {'Ig_u': 79942, 'Ig_t': 96334, 'Ir_t': 359599, 'Ir_u': 1208940, 'M_u': 148652052, 'M_t': 556244061} | |
| trans counts= {'Ig_t-M_t': 69961, 'M_u-Ig_u': 58755, 'M_u-Ig_t': 35161, 'Ig_t-M_u': 2471, 'Ir_t-M_u': 12647, 'Ir_t-M_t': 112054, 'Ir_u-M_t': 233945, 'Ir_u-M_u': 298396, 'Ir_t-Ir_t': 165523, 'Ir_t-Ir_u': 50974, 'Ig_t-Ig_t': 19310, 'Ig_t-Ig_u': 521, 'Ig_u-M_u': 44878, 'Ig_u-M_t': 16856, 'Ir_u-Ir_u': 667197, 'Ir_u-Ir_t': 8214, 'M_u-M_u': 127972346, 'M_u-M_t': 17217247, 'M_t-Ir_u': 38960, 'M_t-Ir_t': 178228, 'Ig_u-Ig_u': 13589, 'M_u-Ir_t': 7634, 'M_u-Ir_u': 430705, 'Ig_u-Ig_t': 4115, 'M_t-Ig_t': 37748, 'M_t-Ig_u': 2730, 'M_t-M_t': 538593998, 'M_t-M_u': 7728177} | |
| Ig_t-Ig_t 0.2004484 | |
| Ig_t-Ig_u 0.0054083 | |
| Ig_t-M_t 0.7262337 | |
| Ig_t-M_u 0.0256503 | |
| Ig_u-Ig_t 0.0514748 | |
| Ig_u-Ig_u 0.1699857 | |
| Ig_u-M_t 0.2108529 | |
| Ig_u-M_u 0.5613820 | |
| Ir_t-Ir_t 0.4602988 | |
| Ir_t-Ir_u 0.1417523 | |
| Ir_t-M_t 0.3116082 | |
| Ir_t-M_u 0.0351697 | |
| Ir_u-Ir_t 0.0067944 | |
| Ir_u-Ir_u 0.5518859 | |
| Ir_u-M_t 0.1935125 | |
| Ir_u-M_u 0.2468245 | |
| M_t-Ig_t 0.0000679 | |
| M_t-Ig_u 0.0000049 | |
| M_t-Ir_t 0.0003204 | |
| M_t-Ir_u 0.0000700 | |
| M_t-M_t 0.9682692 | |
| M_t-M_u 0.0138935 | |
| M_u-Ig_t 0.0002365 | |
| M_u-Ig_u 0.0003953 | |
| M_u-Ir_t 0.0000514 | |
| M_u-Ir_u 0.0028974 | |
| M_u-M_t 0.1158225 | |
| M_u-M_u 0.8608852 |
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| kmer size= 19 | |
| seq count= 12933823 dropped seqs= 315235 | |
| base counts= {'A': 180060887, 'C': 167322781, 'T': 176424298, 'G': 170214374} | |
| state counts= {'Ig_u': 82172, 'Ig_t': 88923, 'Ir_t': 272785, 'Ir_u': 1271981, 'M_u': 153590634, 'M_t': 538715845} | |
| trans counts= {'Ig_t-M_t': 64750, 'M_u-Ig_u': 61829, 'M_u-Ig_t': 34861, 'Ig_t-M_u': 2089, 'Ir_t-M_u': 10442, 'Ir_t-M_t': 92425, 'Ir_u-M_t': 228702, 'Ir_u-M_u': 313730, 'Ir_t-Ir_t': 120599, 'Ir_t-Ir_u': 34337, 'Ig_t-Ig_t': 18017, 'Ig_t-Ig_u': 413, 'Ig_u-M_u': 47356, 'Ig_u-M_t': 16058, 'Ir_u-Ir_u': 721796, 'Ir_u-Ir_t': 6538, 'M_u-M_u': 133625975, 'M_u-M_t': 16284732, 'M_t-Ir_u': 26071, 'M_t-Ir_t': 139398, 'Ig_u-Ig_u': 14151, 'M_u-Ir_t': 6250, 'M_u-Ir_u': 472857, 'Ig_u-Ig_t': 4045, 'M_t-Ig_t': 32000, 'M_t-Ig_u': 2038, 'M_t-M_t': 522029178, 'M_t-M_u': 6993115} | |
| Ig_t-Ig_t 0.2026135 | |
| Ig_t-Ig_u 0.0046445 | |
| Ig_t-M_t 0.7281581 | |
| Ig_t-M_u 0.0234922 | |
| Ig_u-Ig_t 0.0492260 | |
| Ig_u-Ig_u 0.1722119 | |
| Ig_u-M_t 0.1954194 | |
| Ig_u-M_u 0.5763034 | |
| Ir_t-Ir_t 0.4421028 | |
| Ir_t-Ir_u 0.1258757 | |
| Ir_t-M_t 0.3388199 | |
| Ir_t-M_u 0.0382792 | |
| Ir_u-Ir_t 0.0051400 | |
| Ir_u-Ir_u 0.5674582 | |
| Ir_u-M_t 0.1797999 | |
| Ir_u-M_u 0.2466468 | |
| M_t-Ig_t 0.0000594 | |
| M_t-Ig_u 0.0000038 | |
| M_t-Ir_t 0.0002588 | |
| M_t-Ir_u 0.0000484 | |
| M_t-M_t 0.9690251 | |
| M_t-M_u 0.0129811 | |
| M_u-Ig_t 0.0002270 | |
| M_u-Ig_u 0.0004026 | |
| M_u-Ir_t 0.0000407 | |
| M_u-Ir_u 0.0030787 | |
| M_u-M_t 0.1060269 | |
| M_u-M_u 0.8700138 |
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| kmer size= 20 | |
| seq count= 12933823 dropped seqs= 315235 | |
| base counts= {'A': 176844469, 'C': 164244874, 'T': 173181507, 'G': 167132902} | |
| state counts= {'Ig_u': 83750, 'Ig_t': 82596, 'Ir_t': 210307, 'Ir_u': 1315533, 'M_u': 157316340, 'M_t': 522395226} | |
| trans counts= {'Ig_t-M_t': 60516, 'M_u-Ig_u': 63873, 'M_u-Ig_t': 34608, 'Ig_t-M_u': 1733, 'Ir_t-M_u': 9102, 'Ir_t-M_t': 76359, 'Ir_u-M_t': 224654, 'Ir_u-M_u': 325895, 'Ir_t-Ir_t': 89163, 'Ir_t-Ir_u': 23403, 'Ig_t-Ig_t': 16922, 'Ig_t-Ig_u': 316, 'Ig_u-M_u': 49382, 'Ig_u-M_t': 15294, 'Ir_u-Ir_u': 757741, 'Ir_u-Ir_t': 5961, 'M_u-M_u': 137689311, 'M_u-M_t': 15742696, 'M_t-Ir_u': 19970, 'M_t-Ir_t': 109487, 'Ig_u-Ig_u': 14555, 'M_u-Ir_t': 5696, 'M_u-Ir_u': 500228, 'Ig_u-Ig_t': 4000, 'M_t-Ig_t': 27066, 'M_t-Ig_u': 1798, 'M_t-M_t': 506275707, 'M_t-M_u': 6639728} | |
| Ig_t-Ig_t 0.2048767 | |
| Ig_t-Ig_u 0.0038259 | |
| Ig_t-M_t 0.7326747 | |
| Ig_t-M_u 0.0209816 | |
| Ig_u-Ig_t 0.0477612 | |
| Ig_u-Ig_u 0.1737910 | |
| Ig_u-M_t 0.1826149 | |
| Ig_u-M_u 0.5896358 | |
| Ir_t-Ir_t 0.4239659 | |
| Ir_t-Ir_u 0.1112802 | |
| Ir_t-M_t 0.3630835 | |
| Ir_t-M_u 0.0432796 | |
| Ir_u-Ir_t 0.0045312 | |
| Ir_u-Ir_u 0.5759954 | |
| Ir_u-M_t 0.1707703 | |
| Ir_u-M_u 0.2477285 | |
| M_t-Ig_t 0.0000518 | |
| M_t-Ig_u 0.0000034 | |
| M_t-Ir_t 0.0002096 | |
| M_t-Ir_u 0.0000382 | |
| M_t-M_t 0.9691431 | |
| M_t-M_u 0.0127102 | |
| M_u-Ig_t 0.0002200 | |
| M_u-Ig_u 0.0004060 | |
| M_u-Ir_t 0.0000362 | |
| M_u-Ir_u 0.0031798 | |
| M_u-M_t 0.1000703 | |
| M_u-M_u 0.8752385 |
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| kmer size= 21 | |
| seq count= 12933823 dropped seqs= 315235 | |
| base counts= {'A': 173595055, 'C': 161183014, 'T': 169885267, 'G': 164121828} | |
| state counts= {'Ig_u': 84943, 'Ig_t': 77340, 'Ir_t': 163927, 'Ir_u': 1345897, 'M_u': 160392782, 'M_t': 506720275} | |
| trans counts= {'Ir_t-M_u': 6999, 'M_u-Ig_u': 65666, 'M_u-Ig_t': 34246, 'Ig_t-M_u': 1312, 'Ig_t-M_t': 57015, 'Ir_t-M_t': 63752, 'Ir_u-M_t': 220835, 'Ir_u-M_u': 336278, 'Ir_t-Ir_t': 66870, 'Ir_t-Ir_u': 15999, 'Ig_t-Ig_t': 16030, 'Ig_t-Ig_u': 218, 'Ig_u-M_u': 50913, 'Ig_u-M_t': 14744, 'Ir_u-Ir_u': 781860, 'Ir_u-Ir_t': 5609, 'M_u-M_u': 140981290, 'M_u-M_t': 15364986, 'M_t-Ir_u': 15593, 'M_t-Ir_t': 86032, 'Ig_u-Ig_u': 14817, 'M_u-Ir_t': 5416, 'M_u-Ir_u': 520708, 'Ig_u-Ig_t': 3973, 'M_t-Ig_t': 23091, 'M_t-Ig_u': 1469, 'M_t-M_t': 490998943, 'M_t-M_u': 6411912} | |
| Ig_t-Ig_t 0.2072666 | |
| Ig_t-Ig_u 0.0028187 | |
| Ig_t-M_t 0.7371994 | |
| Ig_t-M_u 0.0169641 | |
| Ig_u-Ig_t 0.0467725 | |
| Ig_u-Ig_u 0.1744346 | |
| Ig_u-M_t 0.1735752 | |
| Ig_u-M_u 0.5993784 | |
| Ir_t-Ir_t 0.4079255 | |
| Ir_t-Ir_u 0.0975983 | |
| Ir_t-M_t 0.3889048 | |
| Ir_t-M_u 0.0426958 | |
| Ir_u-Ir_t 0.0041675 | |
| Ir_u-Ir_u 0.5809211 | |
| Ir_u-M_t 0.1640802 | |
| Ir_u-M_u 0.2498542 | |
| M_t-Ig_t 0.0000456 | |
| M_t-Ig_u 0.0000029 | |
| M_t-Ir_t 0.0001698 | |
| M_t-Ir_u 0.0000308 | |
| M_t-M_t 0.9689743 | |
| M_t-M_u 0.0126538 | |
| M_u-Ig_t 0.0002135 | |
| M_u-Ig_u 0.0004094 | |
| M_u-Ir_t 0.0000338 | |
| M_u-Ir_u 0.0032465 | |
| M_u-M_t 0.0957960 | |
| M_u-M_u 0.8789753 |
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| kmer size= 22 | |
| seq count= 12933823 dropped seqs= 315235 | |
| base counts= {'A': 170402613, 'C': 158060929, 'T': 166618517, 'G': 161084517} | |
| state counts= {'Ig_u': 85668, 'Ig_t': 73015, 'Ir_t': 129753, 'Ir_u': 1366380, 'M_u': 163023048, 'M_t': 491488712} | |
| trans counts= {'Ir_t-M_u': 4680, 'M_u-Ig_u': 67096, 'M_u-Ig_t': 33909, 'Ig_t-M_u': 1005, 'Ig_t-M_t': 54243, 'Ir_t-M_t': 54630, 'Ir_u-M_t': 217538, 'Ir_u-M_u': 344200, 'Ir_t-Ir_t': 51752, 'Ir_t-Ir_u': 10291, 'Ig_t-Ig_t': 15286, 'Ig_t-Ig_u': 180, 'Ig_u-M_u': 51952, 'Ig_u-M_t': 14308, 'Ir_u-Ir_u': 797870, 'Ir_u-Ir_t': 5548, 'M_u-M_u': 143749639, 'M_u-M_t': 15079781, 'M_t-Ir_u': 12127, 'M_t-Ir_t': 67255, 'Ig_u-Ig_u': 15001, 'M_u-Ir_t': 5198, 'M_u-Ir_u': 536424, 'Ig_u-Ig_t': 3937, 'M_t-Ig_t': 19883, 'M_t-Ig_u': 957, 'M_t-M_t': 476068212, 'M_t-M_u': 6265086} | |
| Ig_t-Ig_t 0.2093542 | |
| Ig_t-Ig_u 0.0024652 | |
| Ig_t-M_t 0.7429021 | |
| Ig_t-M_u 0.0137643 | |
| Ig_u-Ig_t 0.0459565 | |
| Ig_u-Ig_u 0.1751062 | |
| Ig_u-M_t 0.1670169 | |
| Ig_u-M_u 0.6064341 | |
| Ir_t-Ir_t 0.3988501 | |
| Ir_t-Ir_u 0.0793122 | |
| Ir_t-M_t 0.4210307 | |
| Ir_t-M_u 0.0360685 | |
| Ir_u-Ir_t 0.0040604 | |
| Ir_u-Ir_u 0.5839298 | |
| Ir_u-M_t 0.1592075 | |
| Ir_u-M_u 0.2519065 | |
| M_t-Ig_t 0.0000405 | |
| M_t-Ig_u 0.0000019 | |
| M_t-Ir_t 0.0001368 | |
| M_t-Ir_u 0.0000247 | |
| M_t-M_t 0.9686249 | |
| M_t-M_u 0.0127472 | |
| M_u-Ig_t 0.0002080 | |
| M_u-Ig_u 0.0004116 | |
| M_u-Ir_t 0.0000319 | |
| M_u-Ir_u 0.0032905 | |
| M_u-M_t 0.0925009 | |
| M_u-M_u 0.8817749 |
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| kmer size= 23 | |
| seq count= 12933823 dropped seqs= 315235 | |
| base counts= {'A': 167170973, 'C': 154995473, 'T': 163404457, 'G': 157977085} | |
| state counts= {'Ig_u': 86151, 'Ig_t': 69526, 'Ir_t': 106014, 'Ir_u': 1378462, 'M_u': 165327463, 'M_t': 476580372} | |
| trans counts= {'Ig_t-M_t': 51933, 'M_u-Ig_u': 67970, 'M_u-Ig_t': 33579, 'Ig_t-M_u': 884, 'Ir_t-M_u': 3380, 'Ir_t-M_t': 47911, 'Ir_u-M_t': 214295, 'Ir_u-M_u': 349625, 'Ir_t-Ir_t': 42722, 'Ir_t-Ir_u': 5584, 'Ig_t-Ig_t': 14669, 'Ig_t-Ig_u': 183, 'Ig_u-M_u': 52698, 'Ig_u-M_t': 13956, 'Ir_u-Ir_u': 807962, 'Ir_u-Ir_t': 5424, 'Ig_u-Ig_u': 15133, 'M_u-M_t': 14815838, 'M_t-Ir_u': 8835, 'M_t-Ir_t': 52870, 'M_u-M_u': 146167888, 'M_u-Ir_t': 4998, 'M_u-Ir_u': 548446, 'Ig_u-Ig_t': 3901, 'M_t-Ig_t': 17377, 'M_t-Ig_u': 666, 'M_t-M_t': 461436439, 'M_t-M_u': 6144234} | |
| Ig_t-Ig_t 0.2109858 | |
| Ig_t-Ig_u 0.0026321 | |
| Ig_t-M_t 0.7469580 | |
| Ig_t-M_u 0.0127147 | |
| Ig_u-Ig_t 0.0452810 | |
| Ig_u-Ig_u 0.1756567 | |
| Ig_u-M_t 0.1619946 | |
| Ig_u-M_u 0.6116934 | |
| Ir_t-Ir_t 0.4029845 | |
| Ir_t-Ir_u 0.0526723 | |
| Ir_t-M_t 0.4519309 | |
| Ir_t-M_u 0.0318826 | |
| Ir_u-Ir_t 0.0039348 | |
| Ir_u-Ir_u 0.5861330 | |
| Ir_u-M_t 0.1554595 | |
| Ir_u-M_u 0.2536341 | |
| M_t-Ig_t 0.0000365 | |
| M_t-Ig_u 0.0000014 | |
| M_t-Ir_t 0.0001109 | |
| M_t-Ir_u 0.0000185 | |
| M_t-M_t 0.9682238 | |
| M_t-M_u 0.0128923 | |
| M_u-Ig_t 0.0002031 | |
| M_u-Ig_u 0.0004111 | |
| M_u-Ir_t 0.0000302 | |
| M_u-Ir_u 0.0033173 | |
| M_u-M_t 0.0896151 | |
| M_u-M_u 0.8841114 |
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| kmer size= 24 | |
| seq count= 12933823 dropped seqs= 315235 | |
| base counts= {'A': 163904240, 'C': 151949777, 'T': 160126108, 'G': 154949275} | |
| state counts= {'Ig_u': 86441, 'Ig_t': 66624, 'Ir_t': 90567, 'Ir_u': 1384414, 'M_u': 167344351, 'M_t': 461957003} | |
| trans counts= {'Ir_t-M_u': 2484, 'M_u-Ig_u': 68601, 'M_u-Ig_t': 33215, 'Ig_t-M_u': 699, 'Ig_t-M_t': 50108, 'Ir_t-M_t': 42888, 'Ir_u-M_t': 211087, 'Ir_u-M_u': 353906, 'Ir_t-Ir_t': 37327, 'Ir_t-Ir_u': 3114, 'Ig_t-Ig_t': 14146, 'Ig_t-Ig_u': 131, 'Ig_u-M_u': 53312, 'Ig_u-M_t': 13572, 'Ir_u-Ir_u': 813042, 'Ir_u-Ir_t': 5390, 'Ig_u-Ig_u': 15251, 'M_u-M_t': 14586173, 'M_t-Ir_u': 5657, 'M_t-Ir_t': 43032, 'M_u-M_u': 148286329, 'M_u-Ir_t': 4818, 'M_u-Ir_u': 556888, 'Ig_u-Ig_t': 3882, 'M_t-Ig_t': 15381, 'M_t-Ig_u': 551, 'M_t-M_t': 447053175, 'M_t-M_u': 6036653} | |
| Ig_t-Ig_t 0.2123259 | |
| Ig_t-Ig_u 0.0019663 | |
| Ig_t-M_t 0.7521013 | |
| Ig_t-M_u 0.0104917 | |
| Ig_u-Ig_t 0.0449092 | |
| Ig_u-Ig_u 0.1764325 | |
| Ig_u-M_t 0.1570088 | |
| Ig_u-M_u 0.6167444 | |
| Ir_t-Ir_t 0.4121479 | |
| Ir_t-Ir_u 0.0343834 | |
| Ir_t-M_t 0.4735500 | |
| Ir_t-M_u 0.0274272 | |
| Ir_u-Ir_t 0.0038933 | |
| Ir_u-Ir_u 0.5872824 | |
| Ir_u-M_t 0.1524739 | |
| Ir_u-M_u 0.2556360 | |
| M_t-Ig_t 0.0000333 | |
| M_t-Ig_u 0.0000012 | |
| M_t-Ir_t 0.0000932 | |
| M_t-Ir_u 0.0000122 | |
| M_t-M_t 0.9677376 | |
| M_t-M_u 0.0130676 | |
| M_u-Ig_t 0.0001985 | |
| M_u-Ig_u 0.0004099 | |
| M_u-Ir_t 0.0000288 | |
| M_u-Ir_u 0.0033278 | |
| M_u-M_t 0.0871626 | |
| M_u-M_u 0.8861149 |
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| kmer size= 25 | |
| seq count= 12933823 dropped seqs= 315235 | |
| base counts= {'A': 160702949, 'C': 148835916, 'T': 156870576, 'G': 151901371} | |
| state counts= {'Ig_u': 86433, 'Ig_t': 64287, 'Ir_t': 80354, 'Ir_u': 1387443, 'M_u': 169093858, 'M_t': 447598437} | |
| trans counts= {'Ig_t-M_t': 48615, 'M_u-Ig_u': 69088, 'M_u-Ig_t': 32888, 'Ig_t-M_u': 609, 'Ir_t-M_u': 1638, 'Ir_t-M_t': 39334, 'Ir_u-M_t': 208456, 'Ir_u-M_u': 357143, 'Ir_t-Ir_t': 33914, 'Ir_t-Ir_u': 2028, 'Ig_t-Ig_t': 13711, 'Ig_t-Ig_u': 122, 'Ig_u-M_u': 53744, 'Ig_u-M_t': 13141, 'Ir_u-Ir_u': 815657, 'Ir_u-Ir_t': 5300, 'Ig_u-Ig_u': 15327, 'M_u-M_t': 14390195, 'M_t-Ir_u': 3491, 'M_t-Ir_t': 36409, 'M_u-M_u': 150113622, 'M_u-Ir_t': 4731, 'M_u-Ir_u': 561995, 'Ig_u-Ig_t': 3858, 'M_t-Ig_t': 13830, 'M_t-Ig_u': 370, 'M_t-M_t': 432898696, 'M_t-M_u': 5954312} | |
| Ig_t-Ig_t 0.2132780 | |
| Ig_t-Ig_u 0.0018977 | |
| Ig_t-M_t 0.7562182 | |
| Ig_t-M_u 0.0094731 | |
| Ig_u-Ig_t 0.0446357 | |
| Ig_u-Ig_u 0.1773281 | |
| Ig_u-M_t 0.1520368 | |
| Ig_u-M_u 0.6217995 | |
| Ir_t-Ir_t 0.4220574 | |
| Ir_t-Ir_u 0.0252383 | |
| Ir_t-M_t 0.4895089 | |
| Ir_t-M_u 0.0203848 | |
| Ir_u-Ir_t 0.0038200 | |
| Ir_u-Ir_u 0.5878851 | |
| Ir_u-M_t 0.1502447 | |
| Ir_u-M_u 0.2574109 | |
| M_t-Ig_t 0.0000309 | |
| M_t-Ig_u 0.0000008 | |
| M_t-Ir_t 0.0000813 | |
| M_t-Ir_u 0.0000078 | |
| M_t-M_t 0.9671586 | |
| M_t-M_u 0.0133028 | |
| M_u-Ig_t 0.0001945 | |
| M_u-Ig_u 0.0004086 | |
| M_u-Ir_t 0.0000280 | |
| M_u-Ir_u 0.0033236 | |
| M_u-M_t 0.0851018 | |
| M_u-M_u 0.8877533 |
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| kmer size= 26 | |
| seq count= 12933823 dropped seqs= 315235 | |
| base counts= {'A': 157453235, 'C': 145771089, 'T': 153670787, 'G': 148797113} | |
| state counts= {'Ig_u': 86540, 'Ig_t': 62386, 'Ir_t': 73580, 'Ir_u': 1388752, 'M_u': 170621991, 'M_t': 433458975} | |
| trans counts= {'Ir_t-M_u': 1088, 'M_u-Ig_u': 69422, 'M_u-Ig_t': 32553, 'Ig_t-M_u': 524, 'Ig_t-M_t': 47477, 'Ir_t-M_t': 36969, 'Ir_u-M_t': 206008, 'Ir_u-M_u': 359616, 'Ir_t-Ir_t': 31844, 'Ir_t-Ir_u': 1342, 'Ig_t-Ig_t': 13351, 'Ig_t-Ig_u': 132, 'Ig_u-M_u': 54110, 'Ig_u-M_t': 12885, 'Ir_u-Ir_u': 817110, 'Ir_u-Ir_t': 5207, 'Ig_u-Ig_u': 15405, 'M_u-M_t': 14189853, 'M_t-Ir_u': 2290, 'M_t-Ir_t': 31869, 'M_u-M_u': 151727814, 'M_u-Ir_t': 4660, 'M_u-Ir_u': 564876, 'Ig_u-Ig_t': 3831, 'M_t-Ig_t': 12651, 'M_t-Ig_u': 256, 'M_t-M_t': 418965783, 'M_t-M_u': 5864710} | |
| Ig_t-Ig_t 0.2140063 | |
| Ig_t-Ig_u 0.0021159 | |
| Ig_t-M_t 0.7610201 | |
| Ig_t-M_u 0.0083993 | |
| Ig_u-Ig_t 0.0442685 | |
| Ig_u-Ig_u 0.1780102 | |
| Ig_u-M_t 0.1488907 | |
| Ig_u-M_u 0.6252600 | |
| Ir_t-Ir_t 0.4327806 | |
| Ir_t-Ir_u 0.0182387 | |
| Ir_t-M_t 0.5024327 | |
| Ir_t-M_u 0.0147866 | |
| Ir_u-Ir_t 0.0037494 | |
| Ir_u-Ir_u 0.5883772 | |
| Ir_u-M_t 0.1483404 | |
| Ir_u-M_u 0.2589490 | |
| M_t-Ig_t 0.0000292 | |
| M_t-Ig_u 0.0000006 | |
| M_t-Ir_t 0.0000735 | |
| M_t-Ir_u 0.0000053 | |
| M_t-M_t 0.9665639 | |
| M_t-M_u 0.0135300 | |
| M_u-Ig_t 0.0001908 | |
| M_u-Ig_u 0.0004069 | |
| M_u-Ir_t 0.0000273 | |
| M_u-Ir_u 0.0033107 | |
| M_u-M_t 0.0831654 | |
| M_u-M_u 0.8892629 |
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| kmer size= 27 | |
| seq count= 12933823 dropped seqs= 315235 | |
| base counts= {'A': 154177851, 'C': 142736071, 'T': 150397751, 'G': 145761963} | |
| state counts= {'Ig_u': 86608, 'Ig_t': 60888, 'Ir_t': 69200, 'Ir_u': 1389076, 'M_u': 171919989, 'M_t': 419547875} | |
| trans counts= {'Ir_t-M_u': 829, 'M_u-Ig_u': 69675, 'M_u-Ig_t': 32229, 'Ig_t-M_u': 500, 'Ig_t-M_t': 46522, 'Ir_t-M_t': 35289, 'Ir_u-M_t': 203727, 'Ir_u-M_u': 361636, 'Ir_t-Ir_t': 30563, 'Ir_t-Ir_u': 934, 'Ig_t-Ig_t': 13068, 'Ig_t-Ig_u': 122, 'Ig_u-M_u': 54391, 'Ig_u-M_t': 12643, 'Ir_u-Ir_u': 817962, 'Ir_u-Ir_t': 5143, 'Ig_u-Ig_u': 15496, 'Ig_u-Ig_t': 3817, 'M_t-Ir_u': 1489, 'M_t-Ir_t': 28929, 'M_u-M_u': 153102894, 'M_u-Ir_t': 4565, 'M_u-Ir_u': 566465, 'M_u-M_t': 14008369, 'M_t-Ig_t': 11774, 'M_t-Ig_u': 209, 'M_t-M_t': 405241325, 'M_t-M_u': 5784483} | |
| Ig_t-Ig_t 0.2146236 | |
| Ig_t-Ig_u 0.0020037 | |
| Ig_t-M_t 0.7640586 | |
| Ig_t-M_u 0.0082118 | |
| Ig_u-Ig_t 0.0440721 | |
| Ig_u-Ig_u 0.1789211 | |
| Ig_u-M_t 0.1459796 | |
| Ig_u-M_u 0.6280136 | |
| Ir_t-Ir_t 0.4416618 | |
| Ir_t-Ir_u 0.0134971 | |
| Ir_t-M_t 0.5099566 | |
| Ir_t-M_u 0.0119798 | |
| Ir_u-Ir_t 0.0037025 | |
| Ir_u-Ir_u 0.5888533 | |
| Ir_u-M_t 0.1466637 | |
| Ir_u-M_u 0.2603428 | |
| M_t-Ig_t 0.0000281 | |
| M_t-Ig_u 0.0000005 | |
| M_t-Ir_t 0.0000690 | |
| M_t-Ir_u 0.0000035 | |
| M_t-M_t 0.9659001 | |
| M_t-M_u 0.0137874 | |
| M_u-Ig_t 0.0001875 | |
| M_u-Ig_u 0.0004053 | |
| M_u-Ir_t 0.0000266 | |
| M_u-Ir_u 0.0032949 | |
| M_u-M_t 0.0814819 | |
| M_u-M_u 0.8905474 |
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| kmer size= 28 | |
| seq count= 12933823 dropped seqs= 315235 | |
| base counts= {'A': 150972513, 'C': 139625178, 'T': 147148452, 'G': 142708905} | |
| state counts= {'Ig_u': 86637, 'Ig_t': 59671, 'Ir_t': 66295, 'Ir_u': 1389073, 'M_u': 173013979, 'M_t': 405839393} | |
| trans counts= {'Ir_t-M_u': 619, 'M_u-Ig_u': 69922, 'M_u-Ig_t': 31888, 'Ig_t-M_u': 472, 'Ig_t-M_t': 45718, 'Ir_t-M_t': 34039, 'Ir_u-M_t': 201759, 'Ir_u-M_u': 363315, 'Ir_t-Ir_t': 29787, 'Ir_t-Ir_u': 786, 'Ig_t-Ig_t': 12828, 'Ig_t-Ig_u': 117, 'Ig_u-M_u': 54696, 'Ig_u-M_t': 12340, 'Ir_u-Ir_u': 818410, 'Ir_u-Ir_t': 5040, 'Ig_u-Ig_u': 15587, 'M_u-M_t': 13846437, 'M_t-Ir_u': 957, 'M_t-Ir_t': 26996, 'M_u-M_u': 154260926, 'M_u-Ir_t': 4472, 'M_u-Ir_u': 567409, 'Ig_u-Ig_t': 3801, 'M_t-Ig_t': 11154, 'M_t-Ig_u': 156, 'M_t-M_t': 391699100, 'M_t-M_u': 5717729} | |
| Ig_t-Ig_t 0.2149788 | |
| Ig_t-Ig_u 0.0019608 | |
| Ig_t-M_t 0.7661678 | |
| Ig_t-M_u 0.0079100 | |
| Ig_u-Ig_t 0.0438727 | |
| Ig_u-Ig_u 0.1799116 | |
| Ig_u-M_t 0.1424334 | |
| Ig_u-M_u 0.6313238 | |
| Ir_t-Ir_t 0.4493099 | |
| Ir_t-Ir_u 0.0118561 | |
| Ir_t-M_t 0.5134475 | |
| Ir_t-M_u 0.0093371 | |
| Ir_u-Ir_t 0.0036283 | |
| Ir_u-Ir_u 0.5891771 | |
| Ir_u-M_t 0.1452472 | |
| Ir_u-M_u 0.2615521 | |
| M_t-Ig_t 0.0000275 | |
| M_t-Ig_u 0.0000004 | |
| M_t-Ir_t 0.0000665 | |
| M_t-Ir_u 0.0000024 | |
| M_t-M_t 0.9651579 | |
| M_t-M_u 0.0140886 | |
| M_u-Ig_t 0.0001843 | |
| M_u-Ig_u 0.0004041 | |
| M_u-Ir_t 0.0000258 | |
| M_u-Ir_u 0.0032796 | |
| M_u-M_t 0.0800307 | |
| M_u-M_u 0.8916096 |
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| kmer size= 29 | |
| seq count= 12933823 dropped seqs= 315235 | |
| base counts= {'A': 147724646, 'C': 136567813, 'T': 143945222, 'G': 139598779} | |
| state counts= {'Ig_u': 86758, 'Ig_t': 58623, 'Ir_t': 64314, 'Ir_u': 1389082, 'M_u': 173928749, 'M_t': 392308934} | |
| trans counts= {'Ir_t-M_u': 465, 'M_u-Ig_u': 70153, 'M_u-Ig_t': 31527, 'Ig_t-M_u': 429, 'Ig_t-M_t': 45029, 'Ir_t-M_t': 33161, 'Ir_u-M_t': 200073, 'Ir_u-M_u': 364902, 'Ir_t-Ir_t': 29230, 'Ir_t-Ir_u': 727, 'Ig_t-Ig_t': 12623, 'Ig_t-Ig_u': 105, 'Ig_u-M_u': 54979, 'Ig_u-M_t': 12116, 'Ir_u-Ir_u': 818685, 'Ir_u-Ir_t': 4989, 'Ig_u-Ig_u': 15693, 'M_u-M_t': 13666322, 'M_t-Ir_u': 773, 'M_t-Ir_t': 25665, 'M_u-M_u': 155227348, 'M_u-Ir_t': 4430, 'M_u-Ir_u': 567745, 'Ig_u-Ig_t': 3775, 'M_t-Ig_t': 10698, 'M_t-Ig_u': 130, 'M_t-M_t': 378352233, 'M_t-M_u': 5663867} | |
| Ig_t-Ig_t 0.2153250 | |
| Ig_t-Ig_u 0.0017911 | |
| Ig_t-M_t 0.7681115 | |
| Ig_t-M_u 0.0073179 | |
| Ig_u-Ig_t 0.0435118 | |
| Ig_u-Ig_u 0.1808825 | |
| Ig_u-M_t 0.1396528 | |
| Ig_u-M_u 0.6337052 | |
| Ir_t-Ir_t 0.4544889 | |
| Ir_t-Ir_u 0.0113039 | |
| Ir_t-M_t 0.5156109 | |
| Ir_t-M_u 0.0072302 | |
| Ir_u-Ir_t 0.0035916 | |
| Ir_u-Ir_u 0.5893713 | |
| Ir_u-M_t 0.1440325 | |
| Ir_u-M_u 0.2626929 | |
| M_t-Ig_t 0.0000273 | |
| M_t-Ig_u 0.0000003 | |
| M_t-Ir_t 0.0000654 | |
| M_t-Ir_u 0.0000020 | |
| M_t-M_t 0.9644242 | |
| M_t-M_u 0.0144373 | |
| M_u-Ig_t 0.0001813 | |
| M_u-Ig_u 0.0004033 | |
| M_u-Ir_t 0.0000255 | |
| M_u-Ir_u 0.0032642 | |
| M_u-M_t 0.0785743 | |
| M_u-M_u 0.8924767 |
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| kmer size= 30 | |
| seq count= 12933823 dropped seqs= 315235 | |
| base counts= {'A': 144454720, 'C': 133529144, 'T': 140678610, 'G': 136555398} | |
| state counts= {'Ig_u': 86973, 'Ig_t': 57725, 'Ir_t': 62885, 'Ir_u': 1389091, 'M_u': 174651791, 'M_t': 378969407} | |
| trans counts= {'Ir_t-M_u': 373, 'M_u-Ig_u': 70341, 'M_u-Ig_t': 31210, 'Ig_t-M_u': 408, 'Ig_t-M_t': 44419, 'Ir_t-M_t': 32511, 'Ir_u-M_t': 198397, 'Ir_u-M_u': 366430, 'Ir_t-Ir_t': 28819, 'Ir_t-Ir_u': 643, 'Ig_t-Ig_t': 12427, 'Ig_t-Ig_u': 121, 'Ig_u-M_u': 55252, 'Ig_u-M_t': 12010, 'Ir_u-Ir_u': 818966, 'Ir_u-Ir_t': 4949, 'Ig_u-Ig_u': 15783, 'M_u-M_t': 13490036, 'M_t-Ir_u': 620, 'M_t-Ir_t': 24770, 'M_u-M_u': 156034825, 'M_u-Ir_t': 4347, 'M_u-Ir_u': 567966, 'Ig_u-Ig_t': 3742, 'M_t-Ig_t': 10346, 'M_t-Ig_u': 102, 'M_t-M_t': 365192034, 'M_t-M_u': 5577437} | |
| Ig_t-Ig_t 0.2152793 | |
| Ig_t-Ig_u 0.0020961 | |
| Ig_t-M_t 0.7694933 | |
| Ig_t-M_u 0.0070680 | |
| Ig_u-Ig_t 0.0430248 | |
| Ig_u-Ig_u 0.1814701 | |
| Ig_u-M_t 0.1380888 | |
| Ig_u-M_u 0.6352776 | |
| Ir_t-Ir_t 0.4582810 | |
| Ir_t-Ir_u 0.0102250 | |
| Ir_t-M_t 0.5169913 | |
| Ir_t-M_u 0.0059315 | |
| Ir_u-Ir_t 0.0035628 | |
| Ir_u-Ir_u 0.5895697 | |
| Ir_u-M_t 0.1428251 | |
| Ir_u-M_u 0.2637912 | |
| M_t-Ig_t 0.0000273 | |
| M_t-Ig_u 0.0000003 | |
| M_t-Ir_t 0.0000654 | |
| M_t-Ir_u 0.0000016 | |
| M_t-M_t 0.9636452 | |
| M_t-M_u 0.0147174 | |
| M_u-Ig_t 0.0001787 | |
| M_u-Ig_u 0.0004027 | |
| M_u-Ir_t 0.0000249 | |
| M_u-Ir_u 0.0032520 | |
| M_u-M_t 0.0772396 | |
| M_u-M_u 0.8934052 |
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| kmer size= 31 | |
| seq count= 12933823 dropped seqs= 315235 | |
| base counts= {'A': 141249232, 'C': 130419484, 'T': 137439145, 'G': 133491423} | |
| state counts= {'Ig_u': 87152, 'Ig_t': 56924, 'Ir_t': 61869, 'Ir_u': 1389091, 'M_u': 175194696, 'M_t': 365809552} | |
| trans counts= {'Ir_t-M_u': 367, 'M_u-Ig_u': 70538, 'M_u-Ig_t': 30884, 'Ig_t-M_u': 461, 'Ig_t-M_t': 43752, 'Ir_t-M_t': 31855, 'Ir_u-M_t': 196867, 'Ir_u-M_u': 367846, 'Ir_t-Ir_t': 28502, 'Ir_t-Ir_u': 645, 'Ig_t-Ig_t': 12281, 'Ig_t-Ig_u': 100, 'Ig_u-M_u': 55509, 'Ig_u-M_t': 11874, 'Ir_u-Ir_u': 819133, 'Ir_u-Ir_t': 4916, 'Ig_u-Ig_u': 15888, 'Ig_u-Ig_t': 3713, 'M_t-Ir_u': 480, 'M_t-Ir_t': 24135, 'M_u-M_u': 156632865, 'M_u-Ir_t': 4316, 'M_u-Ir_u': 568065, 'M_u-M_t': 13335207, 'M_t-Ig_t': 10046, 'M_t-Ig_u': 86, 'M_t-M_t': 352189997, 'M_t-M_u': 5520368} | |
| Ig_t-Ig_t 0.2157438 | |
| Ig_t-Ig_u 0.0017567 | |
| Ig_t-M_t 0.7686038 | |
| Ig_t-M_u 0.0080985 | |
| Ig_u-Ig_t 0.0426037 | |
| Ig_u-Ig_u 0.1823022 | |
| Ig_u-M_t 0.1362447 | |
| Ig_u-M_u 0.6369217 | |
| Ir_t-Ir_t 0.4606831 | |
| Ir_t-Ir_u 0.0104253 | |
| Ir_t-M_t 0.5148782 | |
| Ir_t-M_u 0.0059319 | |
| Ir_u-Ir_t 0.0035390 | |
| Ir_u-Ir_u 0.5896899 | |
| Ir_u-M_t 0.1417236 | |
| Ir_u-M_u 0.2648106 | |
| M_t-Ig_t 0.0000275 | |
| M_t-Ig_u 0.0000002 | |
| M_t-Ir_t 0.0000660 | |
| M_t-Ir_u 0.0000013 | |
| M_t-M_t 0.9627687 | |
| M_t-M_u 0.0150908 | |
| M_u-Ig_t 0.0001763 | |
| M_u-Ig_u 0.0004026 | |
| M_u-Ir_t 0.0000246 | |
| M_u-Ir_u 0.0032425 | |
| M_u-M_t 0.0761165 | |
| M_u-M_u 0.8940503 |
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| kmer size= 32 | |
| seq count= 12933823 dropped seqs= 315235 | |
| base counts= {'A': 137999982, 'C': 127353678, 'T': 134245363, 'G': 130381673} | |
| state counts= {'Ig_u': 87418, 'Ig_t': 56115, 'Ir_t': 60842, 'Ir_u': 1389188, 'M_u': 175565128, 'M_t': 352822005} | |
| trans counts= {'Ir_t-M_u': 347, 'M_u-Ig_u': 70716, 'M_u-Ig_t': 30556, 'Ig_t-M_u': 413, 'Ig_t-M_t': 43154, 'Ir_t-M_t': 31264, 'Ir_u-M_t': 195346, 'Ir_u-M_u': 369368, 'Ir_t-Ir_t': 28226, 'Ir_t-Ir_u': 594, 'Ig_t-Ig_t': 12130, 'Ig_t-Ig_u': 103, 'Ig_u-M_u': 55815, 'Ig_u-M_t': 11788, 'Ir_u-Ir_u': 819383, 'Ir_u-Ir_t': 4835, 'Ig_u-Ig_u': 15977, 'M_u-M_t': 13190533, 'M_t-Ir_u': 483, 'M_t-Ir_t': 23544, 'M_u-M_u': 157056312, 'M_u-Ir_t': 4237, 'M_u-Ir_u': 568061, 'Ig_u-Ig_t': 3683, 'M_t-Ig_t': 9746, 'M_t-Ig_u': 127, 'M_t-M_t': 339349920, 'M_t-M_u': 5465447} | |
| Ig_t-Ig_t 0.2161632 | |
| Ig_t-Ig_u 0.0018355 | |
| Ig_t-M_t 0.7690279 | |
| Ig_t-M_u 0.0073599 | |
| Ig_u-Ig_t 0.0421309 | |
| Ig_u-Ig_u 0.1827656 | |
| Ig_u-M_t 0.1348464 | |
| Ig_u-M_u 0.6384841 | |
| Ir_t-Ir_t 0.4639229 | |
| Ir_t-Ir_u 0.0097630 | |
| Ir_t-M_t 0.5138556 | |
| Ir_t-M_u 0.0057033 | |
| Ir_u-Ir_t 0.0034805 | |
| Ir_u-Ir_u 0.5898287 | |
| Ir_u-M_t 0.1406188 | |
| Ir_u-M_u 0.2658877 | |
| M_t-Ig_t 0.0000276 | |
| M_t-Ig_u 0.0000004 | |
| M_t-Ir_t 0.0000667 | |
| M_t-Ir_u 0.0000014 | |
| M_t-M_t 0.9618162 | |
| M_t-M_u 0.0154907 | |
| M_u-Ig_t 0.0001740 | |
| M_u-Ig_u 0.0004028 | |
| M_u-Ir_t 0.0000241 | |
| M_u-Ir_u 0.0032356 | |
| M_u-M_t 0.0751319 | |
| M_u-M_u 0.8945758 |
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| kmer size= 30 | |
| seq count= 12933823 dropped seqs= 315235 | |
| base counts= {'A': 144454720, 'C': 133529144, 'T': 140678610, 'G': 136555398} | |
| state counts= {'Ig_u': 86973, 'Ig_t': 57725, 'Ir_t': 62885, 'Ir_u': 1389091, 'M_u': 174651791, 'M_t': 378969407} | |
| trans counts= {'Ir_t-M_u': 373, 'M_u-Ig_u': 70341, 'M_u-Ig_t': 31210, 'Ig_t-M_u': 408, 'Ig_t-M_t': 44419, 'Ir_t-M_t': 32511, 'Ir_u-M_t': 198397, 'Ir_u-M_u': 366430, 'Ir_t-Ir_t': 28819, 'Ir_t-Ir_u': 643, 'Ig_t-Ig_t': 12427, 'Ig_t-Ig_u': 121, 'Ig_u-M_u': 55252, 'Ig_u-M_t': 12010, 'Ir_u-Ir_u': 818966, 'Ir_u-Ir_t': 4949, 'Ig_u-Ig_u': 15783, 'M_u-M_t': 13490036, 'M_t-Ir_u': 620, 'M_t-Ir_t': 24770, 'M_u-M_u': 156034825, 'M_u-Ir_t': 4347, 'M_u-Ir_u': 567966, 'Ig_u-Ig_t': 3742, 'M_t-Ig_t': 10346, 'M_t-Ig_u': 102, 'M_t-M_t': 365192034, 'M_t-M_u': 5577437} | |
| Ig_t-Ig_t 0.2152793 | |
| Ig_t-Ig_u 0.0020961 | |
| Ig_t-M_t 0.7694933 | |
| Ig_t-M_u 0.0070680 | |
| Ig_u-Ig_t 0.0430248 | |
| Ig_u-Ig_u 0.1814701 | |
| Ig_u-M_t 0.1380888 | |
| Ig_u-M_u 0.6352776 | |
| Ir_t-Ir_t 0.4582810 | |
| Ir_t-Ir_u 0.0102250 | |
| Ir_t-M_t 0.5169913 | |
| Ir_t-M_u 0.0059315 | |
| Ir_u-Ir_t 0.0035628 | |
| Ir_u-Ir_u 0.5895697 | |
| Ir_u-M_t 0.1428251 | |
| Ir_u-M_u 0.2637912 | |
| M_t-Ig_t 0.0000273 | |
| M_t-Ig_u 0.0000003 | |
| M_t-Ir_t 0.0000654 | |
| M_t-Ir_u 0.0000016 | |
| M_t-M_t 0.9636452 | |
| M_t-M_u 0.0147174 | |
| M_u-Ig_t 0.0001787 | |
| M_u-Ig_u 0.0004027 | |
| M_u-Ir_t 0.0000249 | |
| M_u-Ir_u 0.0032520 | |
| M_u-M_t 0.0772396 | |
| M_u-M_u 0.8934052 |
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| KSIZE= 30 | |
| HASH_SIZE= 4e8 | |
| N_HASHES= 4 | |
| all: estimated_probabilities.k$(KSIZE).txt | |
| %.fastq.gz: | |
| wget ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR172/SRR172903/SRR172903.fastq.gz | |
| wget ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR172/SRR172902/SRR172902.fastq.gz | |
| combined_reads.k$(KSIZE).ht: SRR172902.fastq.gz SRR172903.fastq.gz | |
| load-into-counting.py --ksize $(KSIZE) -x $(HASH_SIZE) -N $(N_HASHES) $@ $^ |& tee combined_reads.k$(KSIZE).log | |
| combined_reads_mapping.bam: SRR172902.fastq.gz SRR172903.fastq.gz | |
| bowtie2 -x mockRefG -U SRR172902.fastq.gz -U SRR172903.fastq.gz | samtools view -S -F4 -b - > combined_reads_mapping.bam | |
| estimated_probabilities.k$(KSIZE).txt: combined_reads.k$(KSIZE).ht combined_reads_mapping.bam | |
| python learn.py combined_reads.k$(KSIZE).ht combined_reads_mapping.bam > estimated_probabilities.k$(KSIZE).txt |
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