mr-c

#
# This file was autogenerated using schema-salad-tool --codegen=python
# The code itself is released under the Apache 2.0 license and the help text is
# subject to the license of the original schema.
import copy
import logging
import os
import pathlib
import re
import tempfile

mr-c

{
    "$graph": [
        {
            "class": "Workflow",
            "requirements": [
                {
                    "class": "MultipleInputFeatureRequirement"
                }
            ],
            "inputs": [

mr-c

Sending build context to Docker daemon  4.036MB


Step 1/7 : FROM docker.io/ubuntu:focal-20220426
 ---> 53df61775e88
Step 2/7 : RUN apt-get update && DEBIAN_FRONTEND=noninteractive apt-get install -y --no-install-recommends 	gcc 	python3-dev 	python3-pip 	nodejs 	curl 	libgl1         libegl1
 ---> Using cache
 ---> ee5fc7d4cfa6
Step 3/7 : RUN pip3 install cwltool[deps]
 ---> Using cache

mr-c

#!/bin/bash

# Convenience for executing Common Workflow Language workflows on the Snellius supercomputer
# using toil-cwl-runner from http://toil.ucsc-cgl.org/

# This script accepts all toil-cwl-runner options:
# https://toil.readthedocs.io/en/latest/running/cwl.html#detailed-usage-instructions
# Example usage:
#   cwl-runner my_workflow.cwl my_inputs.yaml
# will read the CWL workflow description "my_workflow.cwl" using the inputs specified

mr-c

#!/bin/bash
#
# Perform local backups of Gitter.im chat rooms.

GITTER_ARCHIVE_URL="https://gitter.im/%s/archives/%s"

usage() {
  echo "usage: $(basename $0) -f -r <chat-room> [-o <output-dir>] [-s <YYYY/MM/DD>] [-e <YYYY/MM/DD>]" 1>&2
  exit 1
}

mr-c

I: Running in no-targz mode
I: pbuilder: network access will be disabled during build
I: Current time: Wed Nov 25 12:48:20 CET 2020
I: pbuilder-time-stamp: 1606304900
I: copying local configuration
W: --override-config is not set; not updating apt.conf Read the manpage for details.
I: mounting /proc filesystem
I: mounting /sys filesystem
I: creating /{dev,run}/shm
I: mounting /dev/pts filesystem

mr-c

I: Running in no-targz mode
I: pbuilder: network access will be disabled during build
I: Current time: Tue Nov 17 18:41:58 CET 2020
I: pbuilder-time-stamp: 1605634918
I: copying local configuration
W: --override-config is not set; not updating apt.conf Read the manpage for details.
I: mounting /proc filesystem
I: mounting /sys filesystem
I: creating /{dev,run}/shm
I: mounting /dev/pts filesystem

mr-c

I: Running in no-targz mode
I: pbuilder: network access will be disabled during build
I: Current time: Tue Nov 17 18:32:33 CET 2020
I: pbuilder-time-stamp: 1605634353
I: copying local configuration
W: --override-config is not set; not updating apt.conf Read the manpage for details.
I: mounting /proc filesystem
I: mounting /sys filesystem
I: creating /{dev,run}/shm
I: mounting /dev/pts filesystem

mr-c

I: Running in no-targz mode
I: pbuilder: network access will be disabled during build
I: Current time: Mon Jul 27 13:19:25 CEST 2020
I: pbuilder-time-stamp: 1595848765
I: copying local configuration
W: --override-config is not set; not updating apt.conf Read the manpage for details.
I: mounting /proc filesystem
I: mounting /sys filesystem
I: creating /{dev,run}/shm
I: mounting /dev/pts filesystem

mr-c

dpkg-buildpackage: info: source package simde
dpkg-buildpackage: info: source version 0.0.0.git.20200526-1
dpkg-buildpackage: info: source distribution unstable
dpkg-buildpackage: info: source changed by Michael R. Crusoe <[email protected]>
 dpkg-source --before-build .
dpkg-buildpackage: info: host architecture ppc64el
 debian/rules clean
dh clean --sourcedirectory=test --builddirectory=gcc_test
   debian/rules override_dh_auto_clean
make[1]: Entering directory '/home/crusoe/simde-0.0.0.git.20200526'