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ImageJ macro making a movie (stack) of zooming on selected rectangle (ROI)
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//ImageJ macro making a movie (stack) of zooming on selected rectangle (ROI) | |
//Eugene Katrukha katpyxa at gmail.com | |
requires("1.48h"); | |
//check if there is rectangular selection | |
if(selectionType() ==0) | |
{ | |
sTitle=getTitle(); | |
sMovieTitle=sTitle+"_zoom_movie"; | |
setBatchMode(true); | |
//ROI parameters | |
Roi.getBounds(nX, nY, nW, nH); | |
//print(nX); | |
//print(nY); | |
//print(nW); | |
//print(nH); | |
//Dialog | |
Dialog.create("Zoom-in parameters:"); | |
Dialog.addNumber("Number of frames for zoom-in:", 10); | |
Dialog.addNumber("Add static number of frames in the end:", 10); | |
minMax=newArray("min","max"); | |
Dialog.addChoice("Zoom to min/max ROI size:", minMax); | |
sScaleChoice=newArray("same as ROI","Specified below"); | |
Dialog.addChoice("Final movie dimensions (px):", sScaleChoice); | |
Dialog.addNumber("Final movie width:", nW); | |
Dialog.addNumber("Final movie width:", nH); | |
Dialog.show(); | |
nFrames=Dialog.getNumber(); | |
nFramesLast=Dialog.getNumber(); | |
sChoice=Dialog.getChoice(); | |
sSizeChoice=Dialog.getChoice(); | |
nFinalW=Dialog.getNumber(); | |
nFinalH=Dialog.getNumber(); | |
//print(nFinalW); | |
//print(nFinalH); | |
imageH=getHeight(); | |
imageW=getWidth(); | |
rawID=getImageID(); | |
nCenterX=nX+0.5*nW; | |
//print("CenterX"); | |
//print(nCenterX); | |
nCenterY=nY+0.5*nH; | |
//print("CenterY"); | |
//print(nCenterY); | |
nScaleX=nW/imageW; | |
nScaleY=nH/imageH; | |
//adjust roi x/y ratio to image x/y ratio | |
//depending on user choice | |
if(startsWith(sChoice, "min")) | |
nScaleFin=minOf(nScaleX,nScaleY); | |
else | |
nScaleFin=maxOf(nScaleX,nScaleY); | |
nW=nScaleFin*imageW; | |
nH=nScaleFin*imageH; | |
//print("New nW"); | |
//print(nW); | |
//print("New nH"); | |
//print(nH); | |
nX=nCenterX-(nW*0.5); | |
nY=nCenterY-(nH*0.5); | |
//print(nX); | |
//print(nY); | |
//distance from (0,0) to left top corner of selsction | |
length=sqrt(nX*nX+nY*nY); | |
//print("length"); | |
//print(length); | |
if(nX==0) | |
angle=3.14/2; | |
else | |
angle=atan(nY/nX); | |
//print("angle"); | |
//print(angle); | |
//final movie size | |
if(startsWith(sSizeChoice,"same as")) | |
{ | |
nFinalW=nW; | |
nFinalH=nH; | |
} | |
else | |
{ | |
nMovieScaleX=nW/nFinalW; | |
nMovieScaleY=nH/nFinalH; | |
nMovieFinalScale = minOf(nMovieScaleX,nMovieScaleY); | |
nFinalW=nW/nMovieFinalScale; | |
nFinalH=nH/nMovieFinalScale; | |
} | |
//print(nFinalW); | |
//print(nFinalH); | |
nScaleStep=(1-nScaleFin)/nFrames; | |
bNotFirstIt=false; | |
dCount =0; | |
//for(nScale=1;nScale>=nScaleFin;nScale=nScale-nScaleStep) | |
nScale=1; | |
for(dCount =0;dCount<=nFrames;dCount++) | |
{ | |
selectImage(rawID); | |
//change viewport position/scale | |
dLen=length*dCount/nFrames; | |
//print("dlen"); | |
//print(dLen); | |
offsetX=dLen*cos(angle); | |
offsetY=dLen*sin(angle); | |
newW=imageW*nScale; | |
newH=imageH*nScale; | |
run("Specify...", "width="+toString(newW)+" height="+toString(newH)+" x="+toString(offsetX)+" y="+toString(offsetY)); | |
run("Duplicate...", "title="+sTitle+toString(nScale)); | |
unscaledID=getImageID(); | |
run("Scale...", "x=- y=- width="+toString(nFinalW)+" height="+toString(nFinalH)+" interpolation=Bicubic average create"); | |
scaledID=getImageID(); | |
selectImage(unscaledID); | |
close(); | |
selectImage(scaledID); | |
//not a first frame, let's add to existing movie stack | |
if(bNotFirstIt) | |
{ | |
sCurrTitle=sTitle+"x"+toString(nScale); | |
rename(sCurrTitle); | |
run("Concatenate...", " title=["+sMovieTitle+"] image1=["+sMovieTitle+"] image2=["+sCurrTitle+"]"); | |
} | |
//first frame, let's make accumulating stack out of it | |
else | |
{ | |
rename(sMovieTitle); | |
sMovieID=getImageID(); | |
bNotFirstIt=true; | |
} | |
nScale=nScale-nScaleStep; | |
} | |
//adding static frames part | |
nScale=nScaleFin; | |
for(nAddFrames=1;nAddFrames<=nFramesLast;nAddFrames++) | |
{ | |
selectImage(rawID); | |
offsetX=dLen*cos(angle); | |
offsetY=dLen*sin(angle); | |
newW=imageW*nScale; | |
newH=imageH*nScale; | |
run("Specify...", "width="+toString(newW)+" height="+toString(newH)+" x="+toString(offsetX)+" y="+toString(offsetY)); | |
run("Duplicate...", "title="+sTitle+toString(nScale)); | |
unscaledID=getImageID(); | |
run("Scale...", "x=- y=- width="+toString(nFinalW)+" height="+toString(nFinalH)+" interpolation=Bilinear average create"); | |
scaledID=getImageID(); | |
selectImage(unscaledID); | |
close(); | |
selectImage(scaledID); | |
sCurrTitle=sTitle+"x"+toString(nScale); | |
rename(sCurrTitle); | |
run("Concatenate...", " title=["+sMovieTitle+"] image1=["+sMovieTitle+"] image2=["+sCurrTitle+"]"); | |
} | |
setBatchMode(false); | |
} | |
//no rectangular ROI selection, error | |
else | |
{ | |
exit("Please choose rectangular selection (ROI) first."); | |
} |
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