ndevenish

$ radon cc -sn C dials
dials/libtbx_refresh.py
    F 34:0 _install_dials_autocompletion - C (17)
dials/algorithms/indexing/compare_orientation_matrices.py
    F 8:0 difference_rotation_matrix_axis_angle - C (11)
dials/algorithms/indexing/fft3d.py
    M 313:2 indexer_fft3d.find_basis_vector_combinations_cluster_analysis - E (38)
    M 210:2 indexer_fft3d.find_candidate_basis_vectors - D (25)
dials/algorithms/indexing/indexer.py
    M 746:2 indexer_base.index - F (53)

ndevenish

xia2/conftest.py
    F 25:0 ccp4 - B (7)
    F 46:0 xds - B (6)
xia2/XIA2Version.py
    F 14:0 get_git_revision - C (15)
xia2/Applications/xia2_helpers.py
    F 9:0 process_one_sweep - B (10)
xia2/Applications/xia2_main.py
    F 69:0 get_command_line - B (10)
    F 25:0 check_environment - B (6)

ndevenish

# Start a monitor thread
(
    wc=0
    while true
    do
        sleep 5
        ## Attempt at being clever with qstat - but problem with
        ## normal "job x finished" output bumping the offset. Ideally
        ## I'd also capture those and use them as a refresh signal
        # if [[ $wc -gt 0 ]]; then

ndevenish

#!/usr/bin/env python3

"""
Finds classes with a show() but no __str__, and adds the method.

Requires the 'bowler' python library.

Usage:
    $ bowler run fix_show.py [-- [--do] [--silent]]

ndevenish

Running fix_show.py over cctbx https://gist.github.com/ndevenish/47813efb6f94576686495edec94cb0ac.

188 Unique show() functions

 79 show() functions didn't qualify
    68 Because of non-object bases
     9 Already had __str__
     2 No str, but already had __repr__

109 show() functions DID qualify

ndevenish

#!/bin/bash

cat <<EOF
Rewriting current branch to master, by applying black.

This is only tested for simple, linear branches and results should
be checked thoroughly before abandoning the old history.
EOF

# Find out the combined base commit

ndevenish

# Work out if we're Redhat
if [ -f /etc/redhat-release ] ; then
  DIST='RH'
  OS_MAJOR=$(lsb_release -r | awk '{print $2;}' | cut -d. -f1 | sed -e 's/^[[:space:]]*//' -e 's/[[:space:]]*$//' )
  OS_SHORT=$DIST$OS_MAJOR
  PS1_OS="\[\e[35m\]RH${OS_MAJOR}\[\e[0m\] "
fi

# This adds 'PHI' to the PS1 if on a Xeon Phi box
if cat /proc/cpuinfo  | grep 'name'| uniq | grep Phi > /dev/null; then

ndevenish

<--""
   Level WARNING
   |
   o<--"dials"
   |   Level DEBUG
   |   Handler Stream <open file '<stdout>', mode 'w' at 0x1075fa150>
   |     Level INFO
   |     Formatter fmt='%(message)s' datefmt=None
   |   Handler File '/Users/nickd/dials/analysis/betalactamase/dials.refine.log'
   |     Level INFO

ndevenish

#!/bin/bash

# The commit on the current cctbx_project/dxtbx equivalent to dxtbx master
BASE_COMMIT=cbf101d68265777cee933a203ccb683ab54ddf13

set -e
set -x

# Make sure repo exists and we're inside it
if [[ "$(basename $(pwd))" != "cctbx_project" ]]; then

ndevenish

/usr/include/stdc-predef.h
/dls/science/users/mep23677/dist/build/include/scitbx/array_family/boost_python/flex_fwd.h
/dls/science/users/mep23677/dist/modules/boost/boost/python/detail/prefix.hpp
/dls/science/users/mep23677/dist/modules/boost/boost/python/detail/wrap_python.hpp
/dls/science/users/mep23677/dist/base/include/python2.7/pyconfig.h
/usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/limits.h
/usr/lib/gcc/x86_64-redhat-linux/4.8.5/include/syslimits.h
/usr/include/limits.h /usr/include/features.h /usr/include/sys/cdefs.h
/usr/include/bits/wordsize.h /usr/include/gnu/stubs.h
/usr/include/gnu/stubs-64.h /usr/include/bits/posix1_lim.h