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@wckdouglas
wckdouglas / README.md
Last active May 14, 2023 16:44
Running deseq2 in python

I have reused the code enough to make a package out of it.

The python package is deposited at Github. with an example in Jupyter notebook.

⚠️ this gist is out-of-date, please see the diffexpr package for a maintained version of the code

@danparsons
danparsons / gist:3195652
Created July 29, 2012 01:46
How to stream the London 2012 Olympics

How to stream the London 2012 Olympics

There have been several HOWTOs posted regarding streaming the 2012 Olympics using HTTP / SOCKS proxies via SSH and other similar methods. None of these actually work using the latest Flash on Mountain Lion (with Firefox, Chrome or Safari). Additionally, the third-party streaming sites don't provide BBC's amazing interface, which lets you quickly skip to individual competitors and events. However, setting up an OpenVPN server does work, with some tweaks. You'll get the exact same UX that people in England receive.

set softtabstop=2
set shiftwidth=2
set tabstop=2
set expandtab "expandtab (whitespace)
set number "line numbers
set ai "autoindent
set si "smartindent
set tw=79 "wrap on 79
set sta "smarttab
set history=100 "remember more than 20 cmd-history
@jboner
jboner / latency.txt
Last active April 14, 2025 01:48
Latency Numbers Every Programmer Should Know
Latency Comparison Numbers (~2012)
----------------------------------
L1 cache reference 0.5 ns
Branch mispredict 5 ns
L2 cache reference 7 ns 14x L1 cache
Mutex lock/unlock 25 ns
Main memory reference 100 ns 20x L2 cache, 200x L1 cache
Compress 1K bytes with Zippy 3,000 ns 3 us
Send 1K bytes over 1 Gbps network 10,000 ns 10 us
Read 4K randomly from SSD* 150,000 ns 150 us ~1GB/sec SSD
@justinko
justinko / Plea.markdown
Created May 30, 2012 19:40
Am I doing it wrong?

Dear Rubyists,

I just lost a contract because of my code in a Rails project.

The specific code in question is related to a "posting a comment" feature. Here are the details:

In this project, "posting a comment" does not simply entail inserting a row into the database. It involves a procedure to yes, insert a row, but also detect its language, check for spam, send emails, and "share" it to Twitter and Facebook. I believe this algorithm should be encapsulated. I do not believe it belongs in a controller or a model. I do not believe Active Record callbacks should be used.

The "senior developer", whom is the stake holder's right hand man, said this:

@erikh
erikh / hack.sh
Created March 31, 2012 07:02 — forked from DAddYE/hack.sh
OSX For Hackers
#!/usr/bin/env sh
##
# This is script with usefull tips taken from:
# https://github.com/mathiasbynens/dotfiles/blob/master/.osx
#
# install it:
# curl -sL https://raw.github.com/gist/2108403/hack.sh | sh
#
@mrflip
mrflip / maximum_battery_life.md
Created March 19, 2012 08:32
maximum battery life checklist -- use before a long plane flight

Max Battery Life Checklist

Here is a checklist to follow if you want maximum battery life -- for instance if you're about to get on a long plane flight.

10 hour battery life on a non-SSD Macbook Pro 17"

Low power use checklist

With power connected:

@didip
didip / model-tests-in-tornado.py
Created March 12, 2011 23:24
Example on how to tests your model classes in Tornado
import unittest, os, os.path, sys
import tornado.database
import tornado.options
from tornado.options import options
APP_ROOT = os.path.abspath(os.path.join(os.path.dirname(__file__), '..'))
sys.path.append(os.path.join(APP_ROOT, '..'))
# import your model module
import your.model as model
anonymous
anonymous / gist:260411
Created December 20, 2009 09:08
#!/usr/bin/env python
"""A Python git pre-commit script for Go programming language projects.
Install the script by putting it in .git/hooks/ directory in your project
directory. The script file must be called "pre-commit". Make sure the
executable flag in the script file is set. The script assumes you are building
your project with make.
The script makes sure that all go source files in the project have valid