Wei Ouyang oeway

I am working with Deep Learning based image analysis and modeling, excited about biology, deep neural nets, open source, Python and JavaScript.

oeway / NGFF-Loader.imjoy.html

Last active May 18, 2021 18:57

	<docs>
	# NGFF image file Loader for ImageJ.JS

	[Next-generation file formats](https://ngff.openmicroscopy.org/latest/) is a specification for storing bioimaging data in the cloud.

	This plugin enalbes loading NGFF image into ImageJ.JS.

	The implementation is adapted from the [OMERO ImJoy](https://github.com/will-moore/omero-imjoy) made by @will-moore

	</docs>

oeway / HPA-UMAP-Studio.imjoy.html

Last active May 14, 2021 17:30

	<docs>
	[TODO: write documentation for this plugin.]
	</docs>

	<config lang="json">
	{
	"name": "HPA-UMAP-Studio",
	"type": "web-worker",
	"tags": [],
	"ui": "",

oeway / uniprot_to_emsembl_conversion.py

Created May 4, 2021 21:16

	import gzip

	# download idmapping.dat.gz from uniprot
	# wget ftp://ftp.ebi.ac.uk/pub/databases/uniprot/current_release/knowledgebase/idmapping/idmapping.dat.gz
	id_mapping_file = './idmapping.dat.gz'

	id_mapping = {}
	for line in gzip.open(id_mapping_file):
	line = line.decode('utf8').strip()
	ac, pred, obj = line.split('\t')

oeway / VueMaterialBackbone.imjoy.html

Created April 17, 2021 14:09

	<docs lang="markdown">
	[TODO: write documentation for this plugin.]
	</docs>

	<config lang="json">
	{
	"name": "VueMaterialBackbone",
	"type": "window",
	"tags": [],
	"ui": "",

oeway / VizarrFigshare.imjoy.html

Last active March 29, 2021 14:12

Python script for uploading files to figshare

	<docs>
	[TODO: write documentation for this plugin.]
	</docs>

	<config lang="json">
	{
	"name": "VizarrFigshare",
	"type": "web-worker",
	"tags": [],
	"ui": "",

oeway / VizarrReferenceStore-Zenodo.imjoy.html

Last active October 19, 2023 03:17

Upload large files to zenodo and serve it as a zarr store (not working yet because zenodo doesn't support range header)

	<docs>
	[TODO: write documentation for this plugin.]
	</docs>

	<config lang="json">
	{
	"name": "VizarrReferenceStore",
	"type": "web-worker",
	"tags": [],
	"ui": "",

oeway / BasicImageAnnotation.imjoy.html

Created February 15, 2021 12:56

	<docs>
	[TODO: write documentation for this plugin.]
	</docs>

	<config lang="json">
	{
	"name": "BasicImageAnnotation",
	"type": "web-worker",
	"tags": [],
	"ui": "",

oeway / OpenFlexureScriptEditor.imjoy.html

Last active February 14, 2021 21:25

	<config lang="json">
	{
	"name": "Script Editor",
	"type": "web-worker",
	"tags": [],
	"ui": "",
	"version": "0.1.0",
	"cover": "",
	"description": "A Script Editor for Controlling OpenFlexure Microscope with ImJoy",
	"icon": "extension",

oeway / OpenFlexureSnapImageTemplate.imjoy.html

Created February 14, 2021 20:42

	<docs>
	[TODO: write documentation for this plugin.]
	</docs>

	<config lang="json">
	{
	"name": "OpenFlexureSnapImageTemplate",
	"type": "web-worker",
	"tags": [],
	"ui": "",

oeway / UNet2DNucleiBroad.md

Last active February 5, 2021 11:04

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