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Pablo Escobar Lopez pescobar

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pescobar / protobuf-3.8.0.patch
Created March 31, 2022 11:06
protbuf-3.8.0 patch
diff -Naur protobuf-3.8.0.orig/src/libprotobuf-lite.map protobuf-3.8.0/src/libprotobuf-lite.map
--- protobuf-3.8.0.orig/src/libprotobuf-lite.map 2019-05-24 20:06:49.000000000 +0200
+++ protobuf-3.8.0/src/libprotobuf-lite.map 2022-03-31 12:49:41.953084066 +0200
@@ -3,6 +3,8 @@
extern "C++" {
*google*;
};
+ scc_info_*;
+ descriptor_table_*;
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pescobar / easybuild_test_report_10888_easybuilders_preasybuild-easyconfigs_20203930-UTC-20-39-04.md
Created June 30, 2020 20:39
EasyBuild test report for easybuilders/easybuild-easyconfigs PR #10888

Test report for easybuilders/easybuild-easyconfigs#10888

Test result

Build succeeded for 9 out of 9 (1 easyconfigs in this PR)

Overview of tested easyconfigs (in order)

  • SUCCESS GCCcore-9.3.0.eb
  • SUCCESS zlib-1.2.11-GCCcore-9.3.0.eb
  • SUCCESS help2man-1.47.12-GCCcore-9.3.0.eb
  • SUCCESS M4-1.4.18-GCCcore-9.3.0.eb
@pescobar
pescobar / easybuild_test_report_10888_easybuilders_preasybuild-easyconfigs_20200230-UTC-18-02-03.md
Created June 30, 2020 18:02
EasyBuild test report for easybuilders/easybuild-easyconfigs PR #10888
@pescobar
pescobar / seqtk-1.3-GCC-9.3.0_partial.log
Created June 30, 2020 18:02
(partial) EasyBuild log for failed build of /tmp/pescobar/eb-tmp/eb-scmmw172/files_pr10888/s/seqtk/seqtk-1.3-GCC-9.3.0.eb (PR #10888)
== 2020-06-30 20:02:00,265 easyblock.py:280 INFO This is EasyBuild 4.2.1 (framework: 4.2.1, easyblocks: 4.2.1) on host generoso-c1-s-1.
== 2020-06-30 20:02:00,265 easyblock.py:286 INFO This is easyblock ConfigureMake from module easybuild.easyblocks.generic.configuremake (/users/pescobar/.virtualenvs/eb-4.2.1/lib/python3.6/site-packages/easybuild/easyblocks/generic/configuremake.py)
== 2020-06-30 20:02:00,265 easyblock.py:843 INFO Build dir set to /tmp/pescobar/eb-build/seqtk/1.3/GCC-9.3.0
== 2020-06-30 20:02:00,265 easyblock.py:903 INFO Software install dir set to /users/pescobar/.local/easybuild/software/seqtk/1.3-GCC-9.3.0
== 2020-06-30 20:02:00,265 easyblock.py:908 INFO Module install dir set to /users/pescobar/.local/easybuild/modules/all
== 2020-06-30 20:02:00,266 easyblock.py:265 INFO Init completed for application name seqtk version 1.3
== 2020-06-30 20:02:00,266 easyblock.py:3208 INFO Obtained application instance of for seqtk (easyblock: ConfigureMake)
== 2020-06-30 20:02:00,266 one.py:159 INFO Skip
@pescobar
pescobar / easybuild_test_report_10871_easybuilders_preasybuild-easyconfigs_20204130-UTC-11-41-04.md
Created June 30, 2020 11:41
EasyBuild test report for easybuilders/easybuild-easyconfigs PR #10871

Test report for easybuilders/easybuild-easyconfigs#10871

Test result

Build succeeded for 1 out of 1 (1 easyconfigs in this PR)

Overview of tested easyconfigs (in order)

  • SUCCESS modeltest-ng-0.1.6-static-linux64.eb

Time info

  • start: Tue, 30 Jun 2020 11:40:38 +0000 (UTC)
@pescobar
pescobar / easybuild_test_report_10871_easybuilders_preasybuild-easyconfigs_20203730-UTC-11-37-46.md
Created June 30, 2020 11:37
EasyBuild test report for easybuilders/easybuild-easyconfigs PR #10871

Test report for easybuilders/easybuild-easyconfigs#10871

Test result

Build succeeded for 1 out of 1 (1 easyconfigs in this PR)

Overview of tested easyconfigs (in order)

  • SUCCESS modeltest-ng-0.1.6-static-linux64.eb

Time info

  • start: Tue, 30 Jun 2020 11:37:32 +0000 (UTC)
@pescobar
pescobar / easybuild_test_report_easyconfigs_pr8588_20193015-UTC-14-30-26.md
Created August 15, 2019 14:30
EasyBuild test report for easyconfigs PR #8588
@pescobar
pescobar / MAGeCK-0.5.9-foss-2018b-Python-3.6.6_partial.log
Created August 15, 2019 14:30
(partial) EasyBuild log for failed build of /scratch/escobar/easybuild/tmp/eb-vCB2DP/files_pr8588/m/MAGeCK/MAGeCK-0.5.9-foss-2018b-Python-3.6.6.eb (PR #8588)
== 2019-08-15 16:30:14,094 easyblock.py:279 INFO This is EasyBuild 3.9.3 (framework: 3.9.3, easyblocks: 3.9.3) on host worker01.cluster.bc2.ch.
== 2019-08-15 16:30:14,094 easyblock.py:285 INFO This is easyblock PythonPackage from module easybuild.easyblocks.generic.pythonpackage (/scicore/soft/apps/EasyBuild/3.9.3/lib/python2.7/site-packages/easybuild_easyblocks-3.9.3-py2.7.egg/easybuild/easyblocks/generic/pythonpackage.pyo)
== 2019-08-15 16:30:14,094 easyblock.py:840 INFO Build dir set to /scratch/escobar/easybuild/MAGeCK/0.5.9/foss-2018b-Python-3.6.6
== 2019-08-15 16:30:14,094 easyblock.py:900 INFO Software install dir set to /scicore/home/scicore/escobar/.local/easybuild/software/MAGeCK/0.5.9-foss-2018b-Python-3.6.6
== 2019-08-15 16:30:14,094 easyblock.py:905 INFO Module install dir set to /scicore/home/scicore/escobar/.local/easybuild/modules/all
== 2019-08-15 16:30:14,094 easyblock.py:264 INFO Init completed for application name MAGeCK version 0.5.9
== 2019-08-15 16:30:14,095 pythonpackage.py:227 INFO Us
@pescobar
pescobar / easybuild_test_report_easyconfigs_pr8588_20192215-UTC-14-22-57.md
Created August 15, 2019 14:22
EasyBuild test report for easyconfigs PR #8588

Test report for easybuilders/easybuild-easyconfigs#8588

Test result

Build succeeded for 0 out of 0 (1 easyconfigs in this PR)

Overview of tested easyconfigs (in order)

Time info

  • start: Thu, 15 Aug 2019 14:22:49 +0000 (UTC)
  • end: Thu, 15 Aug 2019 14:22:57 +0000 (UTC)
@pescobar
pescobar / gist:5412f1fd889563f3600741a861047d3a
Created August 15, 2019 14:04
easyconfig tarball + postinstallcmds
easyblock = 'Tarball'
name = 'snpEff'
version = '4.3p'
versionsuffix = '-Java-%(javaver)s'
homepage = 'http://sourceforge.net/projects/snpeff/'
description = """SnpEff is a variant annotation and effect prediction tool.
It annotates and predicts the effects of genetic variants (such as amino acid changes)."""