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module load cdo
module load nco
module load gdal/2.2.2
cdo -b I16 select,name=maxPV /g/data/ub8/au/LandCover/DEA_ALC/17_-25/fc_metrics_17_-25_2014.nc out.nc
ncpdq -a y,x out.nc out_swap.nc
gdal_translate -ot Byte NETCDF:"out_swap.nc":maxPV test.tiff -co TILED=YES -co COMPRESS=DEFLATE
gdaladdo test.tiff 2 4 8 16 32
import xarray as xr
import numpy as np
import matplotlib.pyplot as plt
print("Jan")
ds = xr.open_dataset("era5_prec_2018H1.nc")
prec = ds.tp.sel(dict(time=slice('2018-01-01', '2018-01-31'))).data * 1000
ds.close()
print(prec.shape)
@prl900
prl900 / add_topo.py
Created August 7, 2019 21:46
Adding ERA5 topography
import numpy as np
import netCDF4
x = netCDF4.Dataset("/datasets/work/D61_CPSR_A_INPUT/ERA5_global/press_levels_201501.nc")["z"][:]
x = np.moveaxes(x,1,-1)
topo = netCDF4.Dataset("/datasets/work/D61_CPSR_A_INPUT/ERA5_global/ERA5_orography.nc")['z'][:]
topo = np.tile(topo, (x.shape[0],1,1,1))
from __future__ import print_function, division
from keras.layers import concatenate, Input, Concatenate, BatchNormalization
from keras.layers.convolutional import UpSampling2D, Conv2D
from keras.models import Model
from keras.optimizers import Adam
import xarray as xr
import numpy as np
import pickle
import tensorflow as tf
import numpy as np
import pandas as pd
import imageio
im_orig = imageio.imread("cameraman.jpg")[::4,::4].astype(np.float32) / 255
im_orig_df = pd.DataFrame(im_orig)
im_df_masked = im_orig_df.copy()
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import datacube
from datacube.storage import masking
import matplotlib.pyplot as plt
import numpy as np
dc = datacube.Datacube(app='load-data-example')
query = {
'lat': (-35.27, -35.33),
'lon': (149.07, 149.15),
import numpy as np
import xarray as xr
# Load ERA5 geopotential levels
era5_ds1 = xr.open_dataset("./datasets/GEOP1000_GAN_2017.nc")
era5_ds2 = xr.open_dataset("./datasets/GEOP800_GAN_2017.nc")
era5_ds3 = xr.open_dataset("./datasets/GEOP500_GAN_2017.nc")
era5_times = era5_ds1.time[:].data
# Load ERA5 total precipitation
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