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Apply one-hot encoding to a pandas DataFrame
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import pandas as pd | |
import numpy as np | |
from sklearn.feature_extraction import DictVectorizer | |
def encode_onehot(df, cols): | |
""" | |
One-hot encoding is applied to columns specified in a pandas DataFrame. | |
Modified from: https://gist.github.com/kljensen/5452382 | |
Details: | |
http://en.wikipedia.org/wiki/One-hot | |
http://scikit-learn.org/stable/modules/generated/sklearn.preprocessing.OneHotEncoder.html | |
@param df pandas DataFrame | |
@param cols a list of columns to encode | |
@return a DataFrame with one-hot encoding | |
""" | |
vec = DictVectorizer() | |
vec_data = pd.DataFrame(vec.fit_transform(df[cols].to_dict(outtype='records')).toarray()) | |
vec_data.columns = vec.get_feature_names() | |
vec_data.index = df.index | |
df = df.drop(cols, axis=1) | |
df = df.join(vec_data) | |
return df | |
def main(): | |
np.random.seed(42) | |
df = pd.DataFrame(np.random.randn(25, 3), columns=['a', 'b', 'c']) | |
# Make some random categorical columns | |
df['e'] = [random.choice(('Chicago', 'Boston', 'New York')) for i in range(df.shape[0])] | |
df['f'] = [random.choice(('Chrome', 'Firefox', 'Opera', "Safari")) for i in range(df.shape[0])] | |
# Vectorize the categorical columns: e & f | |
df = encode_onehot(df, cols=['e', 'f']) | |
print df.head() | |
if __name__ == '__main__': | |
main() |
add the method below will work well on both of the cases above:
def one_hot(df, cols):
for each in cols:
dummies = pd.get_dummies(df[each], prefix=each, drop_first=False)
df = pd.concat([df, dummies], axis=1)
return df
What is the best way to use sklearn's OneHotEncoder with pandas dataframe?
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hi there, I found
encode_onehot(df, cols)
can only encode columns all of strings. When apply todf = pd.DataFrame({'category':[6,7,8,6,7,8], 'number':[1,2,3,4,5,6]})
the methodvec.get_feature_names()
will only return ['category'] and the encoding will fail.