| // Copyright 2021 Johan Rade ([email protected]) | |
| // Distributed under the MIT license (https://opensource.org/licenses/MIT) | |
| #ifndef FAST_EXP_H | |
| #define FAST_EXP_H | |
| #include <cstdint> | |
| #include <cstring> | |
| ##gff-version 3 | |
| #!gff-spec-version 1.21 | |
| #!processor NCBI annotwriter | |
| #!genome-build ASM1798v1 | |
| #!genome-build-accession NCBI_Assembly:GCF_000017985.1 | |
| #!annotation-date 06/08/2024 00:48:35 | |
| #!annotation-source NCBI RefSeq GCF_000017985.1-RS_2024_06_08 | |
| ##sequence-region NC_012967.1 1 4629812 | |
| ##species https://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id=413997 | |
| NC_012967.1 RefSeq region 1 4629812 . + . ID=NC_012967.1:1..4629812;Dbxref=taxon:413997;Is_circular=true;Name=ANONYMOUS;gbkey=Src;genome=chromosome;mol_type=genomic DNA;strain=REL606 |
| /* | |
| This file contains examples of how to do full-width 32-bit multiplication by dividing each | |
| operand into 16-bit fields. | |
| */ | |
| typedef struct { | |
| int low; | |
| int high; | |
| } int_pair_t; | |
Today we will be working with data from the National Health and Nutrition Examination Survey (NHANES).
NHANES is a program of studies designed to assess the health and nutritional status of adults and children in the United States. The survey is unique in that it combines interviews and physical examinations. NHANES is a major program of the National Center for Health Statistics (NCHS). NCHS is part of
In this exercise we are going to download human genomic data generated by the New York Genome Center (NYGC). Information about the data can be found here and details about their pipeline can be found here.
We will start by setting up a git repository on the cluster to hold our project data.
$ mkdir brca1-project
$ cd brca1-project
$ git init
After creating your repository on Github, you need to clone it to Agave. Don't forget to use the correct github url for your repository.
$ cd ~/dc_workshop
$ git clone [email protected]:USERNAME/ga-pipeline-1.git ga-pipeline-1
$ cd ga-pipeline-1
| ## Today we will work on making maps with ggplot2. | |
| # Install the latest version of rbedrock | |
| devtools::install_github("reedacartwright/rbedrock") | |
| # Load tidyverse and rbedrock | |
| library(tidyverse) | |
| library(rbedrock) | |
| # Open World Database |
| ## Today we are going to work on learning how to plot data with | |
| ## ggplot2, which is a part of tidyverse. | |
| # Install the latest version of rbedrock | |
| devtools::install_github("reedacartwright/rbedrock") | |
| # Install tidyverse | |
| install.packages("tidyverse") | |
| # Load tidyverse and rbedrock |
| # Introduction to Analyzing a Minecraft World | |
| # LIA 194 - Class #2 | |
| # We will be using the development branch of the rbedrock library, | |
| # and will use devtools to install or update it. | |
| if (!requireNamespace("devtools", quietly = TRUE)) { | |
| install.packages("devtools") | |
| } | |
| devtools::install_github("reedacartwright/rbedrock") |
| #include <random> | |
| #include <array> | |
| #include <iostream> | |
| using namespace std; | |
| using mat_t = array<array<unsigned int, 32>, 32>; | |
| uint32_t get_seed(int d, int x, int z) { | |
| if(d == 0) { |