I hereby claim:
- I am robsyme on github.
- I am robsyme (https://keybase.io/robsyme) on keybase.
- I have a public key whose fingerprint is C9C5 F0B0 0EC8 640C 9C14 F801 E93F 3A5D D673 2355
To claim this, I am signing this object:
Robert Syme robsyme
robsyme
/ Dog.groovy
Created
November 26, 2020 21:58
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| class Dog { | |
| final String name | |
| Dog(String name) { | |
| this.name = name | |
| } | |
| @Override | |
| public int hashCode() { | |
| return name.hashCode() |
robsyme
/ notebook.nb.html
Last active
January 23, 2019 00:46
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| <!DOCTYPE html> | |
| <html xmlns="http://www.w3.org/1999/xhtml"> | |
| <head> | |
| <meta charset="utf-8" /> | |
| <meta http-equiv="Content-Type" content="text/html; charset=utf-8" /> | |
| <meta name="generator" content="pandoc" /> |
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| ##gff-version 3 | |
| ##sequence-region tig00000000_pilon 14405 1977269 | |
| tig00000000_pilon CodingQuarry_v2.0 gene 14405 16426 . - . ID=gene1 | |
| tig00000000_pilon CodingQuarry_v2.0 mRNA 14405 16426 . - . ID=mRNA1;Parent=gene1 | |
| tig00000000_pilon CodingQuarry_v2.0 CDS 14405 16426 . - 0 Parent=mRNA1 | |
| tig00000000_pilon CodingQuarry_v2.0 exon 14405 16426 . - 0 ID=exon1;Parent=mRNA1 | |
| ### | |
| tig00000000_pilon CodingQuarry_v2.0 gene 17153 17833 . - . ID=gene2 | |
| tig00000000_pilon CodingQuarry_v2.0 mRNA 17153 17833 . - . ID=mRNA2;Parent=gene2 | |
| tig00000000_pilon CodingQuarry_v2.0 CDS 17153 17460 . - 2 ID=CDS1;Parent=mRNA2 |
robsyme
/ keybase.md
Created
July 23, 2016 16:13
robsyme
/ Sue's example Jupyter notebook.ipynb
Created
July 19, 2016 04:28
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robsyme
/ package.scm
Last active
April 24, 2016 16:13
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| (use-modules (guix packages) | |
| (guix download) | |
| (gnu packages ruby) | |
| (guix licenses) | |
| (guix build-system ruby)) | |
| (define ruby-httparty | |
| (package | |
| (name "ruby-httparty") | |
| (version "0.13.7") |
robsyme
/ .nextflow.log
Created
March 14, 2016 07:32
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| Mar-14 07:26:36.530 [main] DEBUG nextflow.cli.Launcher - $> /usr/local/bin/nextflow run -process.executor ignite -with-timeline timeline.html . | |
| Mar-14 07:26:36.645 [main] INFO nextflow.cli.CmdRun - N E X T F L O W ~ version 0.17.3 | |
| Mar-14 07:26:36.910 [main] INFO nextflow.cli.CmdRun - Launching ./main.nf | |
| Mar-14 07:26:37.549 [main] DEBUG nextflow.Session - Session uuid: f25aca13-5ab7-45f6-9d3a-6fe5a5cf738a | |
| Mar-14 07:26:37.555 [main] DEBUG nextflow.Session - Executor pool size: 2 | |
| Mar-14 07:26:37.576 [main] DEBUG nextflow.cli.CmdRun - | |
| Version: 0.17.3 build 3495 | |
| Modified: 18-02-2016 11:00 UTC | |
| System: Linux 4.2.0-25-generic | |
| Runtime: Groovy 2.4.5 on OpenJDK 64-Bit Server VM 1.8.0_66-internal-b17 |
robsyme
/ custom.scm
Last active
March 10, 2016 09:12
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| (define-public codingquarry | |
| (package | |
| (name "codingquarry") | |
| (version "2.0") | |
| (source (origin | |
| (method url-fetch) | |
| (uri (string-append | |
| "mirror://sourceforge/codingquarry/CodingQuarry_v" | |
| version ".tar.gz")) | |
| (sha256 |
robsyme
/ map_spectra_to_genome.rb
Created
December 17, 2015 04:45
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| #!/usr/bin/env ruby | |
| require 'nokogiri' | |
| require 'optparse' | |
| require 'pathname' | |
| require 'tempfile' | |
| require 'ostruct' | |
| require 'digest' | |
| require 'logger' | |
| require 'tmpdir' |
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| #!/usr/bin/env nextflow | |
| params.species = 'species.txt' | |
| species_names = Channel.fromPath(params.species) | |
| genomes = Channel.fromPath(params.genomes).map{ file -> [file.name.lastIndexOf('.').with {it != -1 ? file.name[0..<it] : file.name}, file] }.distinct { id, file -> id } | |
| process get_dothideomycete_descriptions { | |
| output: | |
| file('assemblies.json') into ascomycete_assemblies_json |