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# ----------------------------------------------------------------------------- | |
# From https://en.wikipedia.org/wiki/Minkowski–Bouligand_dimension: | |
# | |
# In fractal geometry, the Minkowski–Bouligand dimension, also known as | |
# Minkowski dimension or box-counting dimension, is a way of determining the | |
# fractal dimension of a set S in a Euclidean space Rn, or more generally in a | |
# metric space (X, d). | |
# ----------------------------------------------------------------------------- | |
import scipy.misc | |
import numpy as np | |
def fractal_dimension(Z, threshold=0.9): | |
# Only for 2d image | |
assert(len(Z.shape) == 2) | |
# From https://github.com/rougier/numpy-100 (#87) | |
def boxcount(Z, k): | |
S = np.add.reduceat( | |
np.add.reduceat(Z, np.arange(0, Z.shape[0], k), axis=0), | |
np.arange(0, Z.shape[1], k), axis=1) | |
# We count non-empty (0) and non-full boxes (k*k) | |
return len(np.where((S > 0) & (S < k*k))[0]) | |
# Transform Z into a binary array | |
Z = (Z < threshold) | |
# Minimal dimension of image | |
p = min(Z.shape) | |
# Greatest power of 2 less than or equal to p | |
n = 2**np.floor(np.log(p)/np.log(2)) | |
# Extract the exponent | |
n = int(np.log(n)/np.log(2)) | |
# Build successive box sizes (from 2**n down to 2**1) | |
sizes = 2**np.arange(n, 1, -1) | |
# Actual box counting with decreasing size | |
counts = [] | |
for size in sizes: | |
counts.append(boxcount(Z, size)) | |
# Fit the successive log(sizes) with log (counts) | |
coeffs = np.polyfit(np.log(sizes), np.log(counts), 1) | |
return -coeffs[0] | |
I = scipy.misc.imread("sierpinski.png")/256.0 | |
print("Minkowski–Bouligand dimension (computed): ", fractal_dimension(I)) | |
print("Haussdorf dimension (theoretical): ", (np.log(3)/np.log(2))) |
thanks, @jankaWIS
and sorry if I ask again is the 52 line is
images = [
'https://upload.wikimedia.org/wikipedia/commons/thumb/7/7c/Peano_Sierpinski_carpet_4.svg/440px-Peano_Sierpinski_carpet_4.svg.png',
'https://upload.wikimedia.org/wikipedia/commons/thumb/b/b7/Sierpinski_carpet_3.svg/244px-Sierpinski_carpet_3.svg.png',
'https://upload.wikimedia.org/wikipedia/commons/f/f0/Flocke.PNG',
'https://upload.wikimedia.org/wikipedia/commons/thumb/3/3b/Quadratic_Koch_2.svg/2880px-Quadratic_Koch_2.svg.png',
'https://upload.wikimedia.org/wikipedia/commons/thumb/5/55/Quadratic_Koch.svg/300px-Quadratic_Koch.svg.png'
]
?
sorry I using the jupyter notebook so not to know about the number
Why are boxes of 2x2 excluded?
Hello, thank you very much for this function. I am finding it very useful in my study of fractals.
However, I drew a jagged line and tried to compute the fractal dimension
Using this code, I get a dimension of around 0.94 which is clearly wrong as it is < 1.
Why am I getting such a number?
Additionally, with other free fractal analysis software, I get a dimension of around 1.088
FWIW the calculation is approximate.. also look at my comment above, there might still be a subtle issue with this code.
Hi delton137!
I used another simple line that I generated, and then with altering the number of boxes, and then after iterating and computing the mean, I believe I got a better estimate. For this other curve, the box-count dimension was 1.06 ish. And it was well within the 95% CI range when I compared it to the FD from the one measured by the software.
I think I hopefully solved my own problem. I came across some papers re: optimal sizes of boxes. I will need to see how to implement that!
Also, I saw that you are also working in medical imaging. It is very inspiring to see interest in fractals and medical imaging. I am but a mere medical student currently, I hope to see a lot more fractals in the future, and a lot more collaboration!
hello
sorry, can anyone tell me how to change the data that I want to get from the link to my laptop data?
I want to try to extract features of an iris