samuelsaari

Author: Miika Mäki

Relationship histories with sequence analysis

Partnership history clusters for Western and Northern Europeans born in 1945 - 1957 at the age of 15 - 60

	// Instructions for setting up readSHARE in Stata

	// What is readSHARE?
	view browse "https://ideas.repec.org/c/boc/bocode/s458405.html"

	// 2.1. Load all the waves that you want to use in the same folder
	* In other words, all folders containing the data for a SHARE wave should be found following the same path , for example under "C:/Users/JohnSmith/Documents/SHARE"
	* Remember to extract the zip-files.
	* We recommend you download all waves at once

	#Part03-e12 radial_fade:

	import os
	import numpy as np
	import matplotlib.pyplot as plt

	# comment this when submitting
	#uncomment when testing locally
	os.chdir("C:/Users/fnsuc/OneDrive - University of Helsinki/Tilasto/python_data_analysis/hy-data-analysis-with-python-spring-2020/part03-e12_radial_fade")
	print(os. getcwd())

	require(devtools)
	#devtools::install_github("benjaminrich/table1")

	library(boot)
	library(table1)
	library(kableExtra)

	melanoma2 <- melanoma

	# Factor the basic variables that

	# modified from https://tex.stackexchange.com/a/162763/244928 by StackExhange user imriss

	"""Copy figures and .tex-files used by document."""
	import os
	import shutil
	import glob
	import re
	from pathlib import Path

	os.chdir(os.path.dirname(__file__)) # working directory to file directory

	# TexPublish - Preparing LaTeX Projects for Publication with Ease
	# URL: https://gist.github.com/samuelsaari/07cfff92e157fad84cd9d1988e108d95
	# Author: Miika Mäki https://github.com/samuelsaari

	# - creates a new directory for publishable files
	# - copies files matching user defined regular expressions to the new directory
	# - copies all desired files that are used by the main tex document (like figures and tables)
	# - creates a parsed bibliography that includes only entries used by the main tex file
	# - flattens the tex file (inserts \input and \include commands and custom preambles in the main tex file)
	# - pastes the parsed bibliography to the flattened tex file if desired

	# Parallel wrapper test for stepFlexmix
	# Miika Maki
	# R-code

	Sys.time()
	rm(list=ls())

	# NB! Set interactive to TRUE or FALSE
	INTERACTIVE=F

	#!/bin/bash -l
	#SBATCH --job-name=r_multicore_flh
	#SBATCH --account=project_2003758
	#SBATCH --output=x_output_all_%j.R
	#SBATCH --error=x_errors_%j.R
	#SBATCH --partition=large # small # test # hugemem_longrun # hugemem
	#SBATCH --time=00:09:59 # 2-23:58:00 # 00:14:54 # 6-23:49:00 # 2-23:49:00


	#SBATCH --nodes=12 #nr_of_classses

	[makimiik@puhti-login12 ~]$ sinteractive --account project_2003758 --mem 64000 --tmp 640 --cores 4
	Launching a new interavtive job

	Interactive batch job is launched with following resources:
	Maximum run time (hours:min:sec): 24:00:00
	Maximum memory (MB): 64000
	$TMPDIR size (GB): 640
	Number of cores/threads: 4
	Accounting project: project_2003758

	#---------------------------------------------------------
	# libraries
	rm(list=ls())

	library(flexmix) # GMM & LCGM
	library(TraMineR) # example data
	library(OpenRepGrid)# random words for headings
	library(khroma) # color palletttes
	library(tidyverse)
	library(car)